Hb_003436_020

Information

Type transcription factor
Description TF Family: Orphans
Location Contig3436: 25747-32003
Sequence    

Annotation

kegg
ID tcc:TCM_021968
description Uncharacterized protein isoform 1
nr
ID XP_012074906.1
description PREDICTED: uncharacterized protein LOC105636276 isoform X2 [Jatropha curcas]
swissprot
ID Q8RWD7
description Protein EMBRYO DEFECTIVE 1674 OS=Arabidopsis thaliana GN=EMB1674 PE=2 SV=1
trembl
ID A0A067KH99
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09049 PE=4 SV=1
Gene Ontology
ID GO:0016458
description mis18-binding protein 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35894: 25700-26000 , PASA_asmbl_35895: 27233-27481 , PASA_asmbl_35896: 29963-31474 , PASA_asmbl_35897: 31150-33274
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003436_020 0.0 transcription factor TF Family: Orphans PREDICTED: uncharacterized protein LOC105636276 isoform X2 [Jatropha curcas]
2 Hb_000610_040 0.0639004696 - - PREDICTED: uncharacterized protein LOC105635307 isoform X1 [Jatropha curcas]
3 Hb_003645_060 0.0664883256 - - PREDICTED: monodehydroascorbate reductase, chloroplastic [Jatropha curcas]
4 Hb_004267_040 0.0691265048 - - PREDICTED: transcriptional adapter ADA2a [Jatropha curcas]
5 Hb_000487_180 0.0691982488 - - PREDICTED: post-GPI attachment to proteins factor 3 isoform X1 [Jatropha curcas]
6 Hb_000563_130 0.0692138331 - - PREDICTED: WD repeat-containing protein 43 [Jatropha curcas]
7 Hb_002301_300 0.0700489073 - - PREDICTED: dol-P-Glc:Glc(2)Man(9)GlcNAc(2)-PP-Dol alpha-1,2-glucosyltransferase isoform X1 [Jatropha curcas]
8 Hb_000120_280 0.073434643 - - PREDICTED: protein transport protein SEC23 [Jatropha curcas]
9 Hb_002014_040 0.0736106012 - - site-1 protease, putative [Ricinus communis]
10 Hb_010272_010 0.07434909 - - PREDICTED: endoplasmic reticulum-Golgi intermediate compartment protein 3 [Jatropha curcas]
11 Hb_001089_070 0.075624968 - - PREDICTED: conserved oligomeric Golgi complex subunit 3 [Jatropha curcas]
12 Hb_002686_040 0.0757304023 - - PREDICTED: T-complex protein 1 subunit theta [Jatropha curcas]
13 Hb_103747_020 0.076499474 - - calcium dependent protein kinase, partial [Hevea brasiliensis]
14 Hb_000139_260 0.0777269243 - - PREDICTED: protein phosphatase 2C 70 [Jatropha curcas]
15 Hb_000035_170 0.0785579664 - - PREDICTED: DNA-directed RNA polymerases IV and V subunit 2-like [Jatropha curcas]
16 Hb_007894_160 0.0792246811 - - PREDICTED: purple acid phosphatase 18 [Jatropha curcas]
17 Hb_001005_030 0.0808521776 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH4 isoform X3 [Jatropha curcas]
18 Hb_001009_320 0.0820623459 - - PREDICTED: uncharacterized protein LOC105640250 [Jatropha curcas]
19 Hb_002641_130 0.0828866493 - - PREDICTED: uncharacterized protein LOC105643556 [Jatropha curcas]
20 Hb_000603_030 0.0833852738 - - Ribonuclease III, putative [Ricinus communis]

Gene co-expression network

sample Hb_003436_020 Hb_003436_020 Hb_000610_040 Hb_000610_040 Hb_003436_020--Hb_000610_040 Hb_003645_060 Hb_003645_060 Hb_003436_020--Hb_003645_060 Hb_004267_040 Hb_004267_040 Hb_003436_020--Hb_004267_040 Hb_000487_180 Hb_000487_180 Hb_003436_020--Hb_000487_180 Hb_000563_130 Hb_000563_130 Hb_003436_020--Hb_000563_130 Hb_002301_300 Hb_002301_300 Hb_003436_020--Hb_002301_300 Hb_000321_140 Hb_000321_140 Hb_000610_040--Hb_000321_140 Hb_103747_020 Hb_103747_020 Hb_000610_040--Hb_103747_020 Hb_003186_020 Hb_003186_020 Hb_000610_040--Hb_003186_020 Hb_007894_160 Hb_007894_160 Hb_000610_040--Hb_007894_160 Hb_000702_090 Hb_000702_090 Hb_000610_040--Hb_000702_090 Hb_003645_060--Hb_000563_130 Hb_003645_060--Hb_004267_040 Hb_001655_030 Hb_001655_030 Hb_003645_060--Hb_001655_030 Hb_000603_030 Hb_000603_030 Hb_003645_060--Hb_000603_030 Hb_010174_040 Hb_010174_040 Hb_003645_060--Hb_010174_040 Hb_000035_170 Hb_000035_170 Hb_003645_060--Hb_000035_170 Hb_000011_100 Hb_000011_100 Hb_004267_040--Hb_000011_100 Hb_000120_280 Hb_000120_280 Hb_004267_040--Hb_000120_280 Hb_004267_040--Hb_000563_130 Hb_005588_090 Hb_005588_090 Hb_004267_040--Hb_005588_090 Hb_000398_080 Hb_000398_080 Hb_004267_040--Hb_000398_080 Hb_004267_040--Hb_000603_030 Hb_000317_510 Hb_000317_510 Hb_000487_180--Hb_000317_510 Hb_001005_030 Hb_001005_030 Hb_000487_180--Hb_001005_030 Hb_001089_070 Hb_001089_070 Hb_000487_180--Hb_001089_070 Hb_002054_050 Hb_002054_050 Hb_000487_180--Hb_002054_050 Hb_000487_180--Hb_000610_040 Hb_000563_130--Hb_000603_030 Hb_000563_130--Hb_000398_080 Hb_000563_130--Hb_000011_100 Hb_000836_410 Hb_000836_410 Hb_000563_130--Hb_000836_410 Hb_002092_130 Hb_002092_130 Hb_002301_300--Hb_002092_130 Hb_010294_010 Hb_010294_010 Hb_002301_300--Hb_010294_010 Hb_001009_320 Hb_001009_320 Hb_002301_300--Hb_001009_320 Hb_003375_070 Hb_003375_070 Hb_002301_300--Hb_003375_070 Hb_002301_300--Hb_004267_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.933895 1.00664 1.55981 1.33093 1.87623 1.19142
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.649172 0.603595 0.786544 1.48168 1.21662

CAGE analysis