Hb_010294_010

Information

Type -
Description -
Location Contig10294: 17523-24360
Sequence    

Annotation

kegg
ID cmo:103504678
description dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3B
nr
ID XP_012079356.1
description PREDICTED: dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3B [Jatropha curcas]
swissprot
ID Q9FX21
description Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3B OS=Arabidopsis thaliana GN=STT3B PE=2 SV=1
trembl
ID A0A067LN03
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17416 PE=4 SV=1
Gene Ontology
ID GO:0004576
description dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit stt3b

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01162: 17605-24171 , PASA_asmbl_01163: 17528-24243
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010294_010 0.0 - - PREDICTED: dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3B [Jatropha curcas]
2 Hb_000667_030 0.0634225612 - - PREDICTED: protein transport protein SEC23-like [Jatropha curcas]
3 Hb_002301_300 0.0704991026 - - PREDICTED: dol-P-Glc:Glc(2)Man(9)GlcNAc(2)-PP-Dol alpha-1,2-glucosyltransferase isoform X1 [Jatropha curcas]
4 Hb_002026_150 0.0766750035 transcription factor TF Family: SNF2 PREDICTED: DNA repair helicase XPB1 isoform X1 [Jatropha curcas]
5 Hb_011228_010 0.0774750777 - - PREDICTED: vacuolar protein sorting-associated protein 54, chloroplastic isoform X1 [Jatropha curcas]
6 Hb_000960_040 0.0785779478 - - PREDICTED: ERAD-associated E3 ubiquitin-protein ligase HRD1B-like [Vitis vinifera]
7 Hb_012330_010 0.0794254055 - - PREDICTED: polyadenylate-binding protein-interacting protein 12-like isoform X1 [Jatropha curcas]
8 Hb_001348_080 0.0823794332 - - PREDICTED: sister chromatid cohesion protein PDS5 homolog A isoform X1 [Jatropha curcas]
9 Hb_001655_030 0.08274595 transcription factor TF Family: SNF2 PREDICTED: SNF2 domain-containing protein CLASSY 3 isoform X2 [Jatropha curcas]
10 Hb_000264_350 0.0827959279 - - PREDICTED: uncharacterized protein LOC105649541 [Jatropha curcas]
11 Hb_008511_020 0.0829681404 - - PREDICTED: coatomer subunit gamma-2 [Jatropha curcas]
12 Hb_000035_170 0.0840271373 - - PREDICTED: DNA-directed RNA polymerases IV and V subunit 2-like [Jatropha curcas]
13 Hb_012518_070 0.0845291684 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 9 isoform X1 [Jatropha curcas]
14 Hb_001789_030 0.0850934811 - - PREDICTED: signal peptide peptidase-like 1 [Jatropha curcas]
15 Hb_001279_030 0.0852188987 - - PREDICTED: serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' theta isoform-like [Jatropha curcas]
16 Hb_006501_090 0.0853940596 - - PREDICTED: golgin candidate 1 [Jatropha curcas]
17 Hb_000579_240 0.0855285621 - - phosphatidylinositol transporter, putative [Ricinus communis]
18 Hb_010142_020 0.0860845152 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000441_090 0.0863757706 - - PREDICTED: serine/threonine-protein phosphatase 6 regulatory subunit 2 [Jatropha curcas]
20 Hb_000352_300 0.0864724121 - - PREDICTED: eukaryotic peptide chain release factor subunit 1-3 [Jatropha curcas]

Gene co-expression network

sample Hb_010294_010 Hb_010294_010 Hb_000667_030 Hb_000667_030 Hb_010294_010--Hb_000667_030 Hb_002301_300 Hb_002301_300 Hb_010294_010--Hb_002301_300 Hb_002026_150 Hb_002026_150 Hb_010294_010--Hb_002026_150 Hb_011228_010 Hb_011228_010 Hb_010294_010--Hb_011228_010 Hb_000960_040 Hb_000960_040 Hb_010294_010--Hb_000960_040 Hb_012330_010 Hb_012330_010 Hb_010294_010--Hb_012330_010 Hb_005215_010 Hb_005215_010 Hb_000667_030--Hb_005215_010 Hb_012518_070 Hb_012518_070 Hb_000667_030--Hb_012518_070 Hb_021297_050 Hb_021297_050 Hb_000667_030--Hb_021297_050 Hb_000494_050 Hb_000494_050 Hb_000667_030--Hb_000494_050 Hb_000317_100 Hb_000317_100 Hb_000667_030--Hb_000317_100 Hb_002092_130 Hb_002092_130 Hb_002301_300--Hb_002092_130 Hb_003436_020 Hb_003436_020 Hb_002301_300--Hb_003436_020 Hb_001009_320 Hb_001009_320 Hb_002301_300--Hb_001009_320 Hb_003375_070 Hb_003375_070 Hb_002301_300--Hb_003375_070 Hb_004267_040 Hb_004267_040 Hb_002301_300--Hb_004267_040 Hb_010142_020 Hb_010142_020 Hb_002026_150--Hb_010142_020 Hb_001105_020 Hb_001105_020 Hb_002026_150--Hb_001105_020 Hb_002169_050 Hb_002169_050 Hb_002026_150--Hb_002169_050 Hb_000366_200 Hb_000366_200 Hb_002026_150--Hb_000366_200 Hb_000011_060 Hb_000011_060 Hb_002026_150--Hb_000011_060 Hb_000614_240 Hb_000614_240 Hb_002026_150--Hb_000614_240 Hb_001279_030 Hb_001279_030 Hb_011228_010--Hb_001279_030 Hb_000039_150 Hb_000039_150 Hb_011228_010--Hb_000039_150 Hb_004679_030 Hb_004679_030 Hb_011228_010--Hb_004679_030 Hb_002027_080 Hb_002027_080 Hb_011228_010--Hb_002027_080 Hb_008959_010 Hb_008959_010 Hb_011228_010--Hb_008959_010 Hb_002055_040 Hb_002055_040 Hb_011228_010--Hb_002055_040 Hb_000004_030 Hb_000004_030 Hb_000960_040--Hb_000004_030 Hb_000264_350 Hb_000264_350 Hb_000960_040--Hb_000264_350 Hb_008511_020 Hb_008511_020 Hb_000960_040--Hb_008511_020 Hb_000960_040--Hb_000667_030 Hb_002675_030 Hb_002675_030 Hb_000960_040--Hb_002675_030 Hb_012733_070 Hb_012733_070 Hb_012330_010--Hb_012733_070 Hb_003280_020 Hb_003280_020 Hb_012330_010--Hb_003280_020 Hb_001348_080 Hb_001348_080 Hb_012330_010--Hb_001348_080 Hb_012330_010--Hb_008511_020 Hb_002749_060 Hb_002749_060 Hb_012330_010--Hb_002749_060 Hb_012330_010--Hb_002027_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.166 14.9153 18.9722 27.4799 26.7542 17.9987
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.3035 11.0455 19.5799 25.8776 27.9819

CAGE analysis