Hb_011228_010

Information

Type -
Description -
Location Contig11228: 27629-42748
Sequence    

Annotation

kegg
ID rcu:RCOM_1557940
description vacuolar protein sorting, putative
nr
ID XP_012075576.1
description PREDICTED: vacuolar protein sorting-associated protein 54, chloroplastic isoform X1 [Jatropha curcas]
swissprot
ID F4JT76
description Vacuolar protein sorting-associated protein 54, chloroplastic OS=Arabidopsis thaliana GN=VPS54 PE=1 SV=1
trembl
ID A0A067KFA0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09194 PE=4 SV=1
Gene Ontology
ID GO:0005622
description vps54 isoform 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03702: 8296-42684 , PASA_asmbl_03708: 42793-43126
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011228_010 0.0 - - PREDICTED: vacuolar protein sorting-associated protein 54, chloroplastic isoform X1 [Jatropha curcas]
2 Hb_001279_030 0.0571375029 - - PREDICTED: serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' theta isoform-like [Jatropha curcas]
3 Hb_000039_150 0.0614168986 - - PREDICTED: lysine-specific demethylase JMJ25 isoform X1 [Jatropha curcas]
4 Hb_004679_030 0.0659437147 - - PREDICTED: LOW QUALITY PROTEIN: F-box protein SKIP23-like [Jatropha curcas]
5 Hb_002027_080 0.0687243158 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105650047 [Jatropha curcas]
6 Hb_008959_010 0.0690418282 - - conserved hypothetical protein [Ricinus communis]
7 Hb_002055_040 0.0705367808 - - PREDICTED: large subunit GTPase 1 homolog [Jatropha curcas]
8 Hb_001936_130 0.0749224957 - - PREDICTED: signal recognition particle receptor subunit beta-like [Jatropha curcas]
9 Hb_000556_090 0.0771547026 - - PREDICTED: uncharacterized protein LOC105643091 isoform X1 [Jatropha curcas]
10 Hb_010294_010 0.0774750777 - - PREDICTED: dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3B [Jatropha curcas]
11 Hb_003544_140 0.077651288 - - PREDICTED: protein GDAP2 homolog isoform X1 [Jatropha curcas]
12 Hb_004108_160 0.0786491791 - - PREDICTED: myosin heavy chain, non-muscle-like [Jatropha curcas]
13 Hb_000359_210 0.0799188882 - - conserved hypothetical protein [Ricinus communis]
14 Hb_006501_090 0.0799678687 - - PREDICTED: golgin candidate 1 [Jatropha curcas]
15 Hb_002099_080 0.0800849315 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 37-like [Jatropha curcas]
16 Hb_004680_120 0.0809260507 - - PREDICTED: UDP-glucuronic acid decarboxylase 1 [Jatropha curcas]
17 Hb_005291_050 0.0819942652 - - PREDICTED: mannan endo-1,4-beta-mannosidase 6-like isoform X1 [Jatropha curcas]
18 Hb_002897_090 0.0832504477 - - conserved hypothetical protein [Ricinus communis]
19 Hb_001498_010 0.0836200763 - - PREDICTED: uncharacterized protein LOC105648994 [Jatropha curcas]
20 Hb_001655_030 0.0857942847 transcription factor TF Family: SNF2 PREDICTED: SNF2 domain-containing protein CLASSY 3 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_011228_010 Hb_011228_010 Hb_001279_030 Hb_001279_030 Hb_011228_010--Hb_001279_030 Hb_000039_150 Hb_000039_150 Hb_011228_010--Hb_000039_150 Hb_004679_030 Hb_004679_030 Hb_011228_010--Hb_004679_030 Hb_002027_080 Hb_002027_080 Hb_011228_010--Hb_002027_080 Hb_008959_010 Hb_008959_010 Hb_011228_010--Hb_008959_010 Hb_002055_040 Hb_002055_040 Hb_011228_010--Hb_002055_040 Hb_005291_050 Hb_005291_050 Hb_001279_030--Hb_005291_050 Hb_006501_090 Hb_006501_090 Hb_001279_030--Hb_006501_090 Hb_000181_240 Hb_000181_240 Hb_001279_030--Hb_000181_240 Hb_001279_030--Hb_000039_150 Hb_015807_050 Hb_015807_050 Hb_001279_030--Hb_015807_050 Hb_000039_150--Hb_008959_010 Hb_002769_030 Hb_002769_030 Hb_000039_150--Hb_002769_030 Hb_000039_150--Hb_006501_090 Hb_007426_110 Hb_007426_110 Hb_000039_150--Hb_007426_110 Hb_007765_100 Hb_007765_100 Hb_000039_150--Hb_007765_100 Hb_000809_230 Hb_000809_230 Hb_004679_030--Hb_000809_230 Hb_003544_160 Hb_003544_160 Hb_004679_030--Hb_003544_160 Hb_009296_040 Hb_009296_040 Hb_004679_030--Hb_009296_040 Hb_001377_350 Hb_001377_350 Hb_004679_030--Hb_001377_350 Hb_005582_040 Hb_005582_040 Hb_004679_030--Hb_005582_040 Hb_002897_090 Hb_002897_090 Hb_002027_080--Hb_002897_090 Hb_001518_080 Hb_001518_080 Hb_002027_080--Hb_001518_080 Hb_003581_200 Hb_003581_200 Hb_002027_080--Hb_003581_200 Hb_000441_090 Hb_000441_090 Hb_002027_080--Hb_000441_090 Hb_000773_040 Hb_000773_040 Hb_002027_080--Hb_000773_040 Hb_000635_090 Hb_000635_090 Hb_002027_080--Hb_000635_090 Hb_004108_160 Hb_004108_160 Hb_008959_010--Hb_004108_160 Hb_002263_020 Hb_002263_020 Hb_008959_010--Hb_002263_020 Hb_008959_010--Hb_002769_030 Hb_001304_110 Hb_001304_110 Hb_008959_010--Hb_001304_110 Hb_002099_080 Hb_002099_080 Hb_002055_040--Hb_002099_080 Hb_000365_240 Hb_000365_240 Hb_002055_040--Hb_000365_240 Hb_002055_040--Hb_000039_150 Hb_007820_010 Hb_007820_010 Hb_002055_040--Hb_007820_010 Hb_000388_090 Hb_000388_090 Hb_002055_040--Hb_000388_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.93336 5.9692 8.37629 10.714 9.04425 10.3173
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.39323 5.54177 11.2765 10.0837 15.7531

CAGE analysis