Hb_004108_160

Information

Type -
Description -
Location Contig4108: 120321-132634
Sequence    

Annotation

kegg
ID tcc:TCM_004437
description hypothetical protein
nr
ID XP_012092284.1
description PREDICTED: myosin heavy chain, non-muscle-like [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JCF9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21963 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40583: 119908-132473 , PASA_asmbl_40584: 125945-126360
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004108_160 0.0 - - PREDICTED: myosin heavy chain, non-muscle-like [Jatropha curcas]
2 Hb_003153_010 0.0517002604 - - PREDICTED: diacylglycerol kinase 3-like [Jatropha curcas]
3 Hb_000556_090 0.0590158205 - - PREDICTED: uncharacterized protein LOC105643091 isoform X1 [Jatropha curcas]
4 Hb_001629_030 0.0610093446 - - PAP-specific phosphatase HAL2-like family protein [Populus trichocarpa]
5 Hb_008959_010 0.0655765198 - - conserved hypothetical protein [Ricinus communis]
6 Hb_001818_100 0.0690550585 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 11-like [Jatropha curcas]
7 Hb_008421_020 0.0721784093 - - PREDICTED: uncharacterized protein LOC105635546 isoform X2 [Jatropha curcas]
8 Hb_002769_030 0.0769840339 - - PREDICTED: MATE efflux family protein 4, chloroplastic-like [Jatropha curcas]
9 Hb_000096_140 0.0774377239 transcription factor TF Family: GNAT PREDICTED: probable amino-acid acetyltransferase NAGS1, chloroplastic isoform X1 [Jatropha curcas]
10 Hb_019181_040 0.0784254978 - - component of oligomeric golgi complex, putative [Ricinus communis]
11 Hb_011228_010 0.0786491791 - - PREDICTED: vacuolar protein sorting-associated protein 54, chloroplastic isoform X1 [Jatropha curcas]
12 Hb_001347_060 0.0796979846 - - PREDICTED: heterogeneous nuclear ribonucleoprotein 1 [Jatropha curcas]
13 Hb_001912_110 0.0809427153 - - PREDICTED: protoheme IX farnesyltransferase, mitochondrial isoform X1 [Jatropha curcas]
14 Hb_000039_150 0.0810053785 - - PREDICTED: lysine-specific demethylase JMJ25 isoform X1 [Jatropha curcas]
15 Hb_003025_100 0.0810802656 - - PREDICTED: serine/threonine-protein phosphatase 5 isoform X2 [Jatropha curcas]
16 Hb_004583_010 0.0833096818 - - PREDICTED: pentatricopeptide repeat-containing protein At3g22150, chloroplastic [Jatropha curcas]
17 Hb_091296_010 0.084073523 - - PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]
18 Hb_000184_170 0.0848136234 - - hypothetical protein RCOM_1213430 [Ricinus communis]
19 Hb_000212_230 0.0852207255 - - PREDICTED: endoribonuclease Dicer homolog 2 [Jatropha curcas]
20 Hb_001279_030 0.0853407742 - - PREDICTED: serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' theta isoform-like [Jatropha curcas]

Gene co-expression network

sample Hb_004108_160 Hb_004108_160 Hb_003153_010 Hb_003153_010 Hb_004108_160--Hb_003153_010 Hb_000556_090 Hb_000556_090 Hb_004108_160--Hb_000556_090 Hb_001629_030 Hb_001629_030 Hb_004108_160--Hb_001629_030 Hb_008959_010 Hb_008959_010 Hb_004108_160--Hb_008959_010 Hb_001818_100 Hb_001818_100 Hb_004108_160--Hb_001818_100 Hb_008421_020 Hb_008421_020 Hb_004108_160--Hb_008421_020 Hb_003153_010--Hb_000556_090 Hb_003376_230 Hb_003376_230 Hb_003153_010--Hb_003376_230 Hb_002769_030 Hb_002769_030 Hb_003153_010--Hb_002769_030 Hb_003153_010--Hb_008421_020 Hb_000184_170 Hb_000184_170 Hb_003153_010--Hb_000184_170 Hb_004052_170 Hb_004052_170 Hb_000556_090--Hb_004052_170 Hb_011228_010 Hb_011228_010 Hb_000556_090--Hb_011228_010 Hb_000556_090--Hb_001818_100 Hb_000340_230 Hb_000340_230 Hb_000556_090--Hb_000340_230 Hb_001629_030--Hb_001818_100 Hb_005601_040 Hb_005601_040 Hb_001629_030--Hb_005601_040 Hb_000656_010 Hb_000656_010 Hb_001629_030--Hb_000656_010 Hb_001629_030--Hb_004052_170 Hb_001629_030--Hb_003153_010 Hb_000039_150 Hb_000039_150 Hb_008959_010--Hb_000039_150 Hb_002263_020 Hb_002263_020 Hb_008959_010--Hb_002263_020 Hb_008959_010--Hb_002769_030 Hb_001304_110 Hb_001304_110 Hb_008959_010--Hb_001304_110 Hb_008959_010--Hb_011228_010 Hb_003025_100 Hb_003025_100 Hb_001818_100--Hb_003025_100 Hb_001818_100--Hb_004052_170 Hb_001818_100--Hb_005601_040 Hb_000768_200 Hb_000768_200 Hb_001818_100--Hb_000768_200 Hb_000811_070 Hb_000811_070 Hb_008421_020--Hb_000811_070 Hb_013405_020 Hb_013405_020 Hb_008421_020--Hb_013405_020 Hb_001541_120 Hb_001541_120 Hb_008421_020--Hb_001541_120 Hb_005016_040 Hb_005016_040 Hb_008421_020--Hb_005016_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.7287 12.8143 20.8555 21.9956 17.4461 16.3858
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
15.3737 18.2147 26.4073 17.0236 31.8186

CAGE analysis