Hb_013405_020

Information

Type -
Description -
Location Contig13405: 12421-14583
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09643: 13315-14589
cDNA
(Sanger)
(ID:Location)		 016_J14r.ab1: 15103-17159

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_013405_020 0.0 - - -
2 Hb_007975_060 0.0657468204 - - PREDICTED: uncharacterized GPI-anchored protein At1g61900 isoform X2 [Jatropha curcas]
3 Hb_008421_020 0.0667244816 - - PREDICTED: uncharacterized protein LOC105635546 isoform X2 [Jatropha curcas]
4 Hb_005016_040 0.0728392801 transcription factor TF Family: E2F-DP PREDICTED: transcription factor-like protein DPB isoform X2 [Jatropha curcas]
5 Hb_002157_120 0.0809427261 - - conserved hypothetical protein [Ricinus communis]
6 Hb_006132_090 0.085963765 - - PREDICTED: origin of replication complex subunit 5 isoform X1 [Jatropha curcas]
7 Hb_004754_050 0.0891267622 - - PREDICTED: uncharacterized protein LOC104433925 [Eucalyptus grandis]
8 Hb_007002_020 0.0935848965 - - PREDICTED: uncharacterized protein LOC105642604 [Jatropha curcas]
9 Hb_000061_180 0.0941951719 - - exonuclease, putative [Ricinus communis]
10 Hb_001226_140 0.0943216562 - - PREDICTED: protein phosphatase 2C 77-like [Jatropha curcas]
11 Hb_000137_040 0.0965600262 - - aspartyl-tRNA synthetase, putative [Ricinus communis]
12 Hb_000768_200 0.0969733319 - - hypothetical protein POPTR_0013s06910g [Populus trichocarpa]
13 Hb_007533_040 0.0977330918 - - protein phosphatase 2c, putative [Ricinus communis]
14 Hb_000925_130 0.0980065938 transcription factor TF Family: TRAF PREDICTED: BTB/POZ domain-containing protein At3g05675-like isoform X2 [Jatropha curcas]
15 Hb_000023_260 0.0986562762 - - PREDICTED: monogalactosyldiacylglycerol synthase, chloroplastic [Jatropha curcas]
16 Hb_000811_070 0.0995749181 - - PREDICTED: uncharacterized protein LOC105650695 [Jatropha curcas]
17 Hb_000244_180 0.1011513207 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000140_090 0.1014251302 - - PREDICTED: C-terminal binding protein AN [Jatropha curcas]
19 Hb_000487_260 0.1035368986 - - PREDICTED: protein Iojap, chloroplastic [Jatropha curcas]
20 Hb_029866_120 0.1036118242 - - hypothetical protein CICLE_v10006070mg [Citrus clementina]

Gene co-expression network

sample Hb_013405_020 Hb_013405_020 Hb_007975_060 Hb_007975_060 Hb_013405_020--Hb_007975_060 Hb_008421_020 Hb_008421_020 Hb_013405_020--Hb_008421_020 Hb_005016_040 Hb_005016_040 Hb_013405_020--Hb_005016_040 Hb_002157_120 Hb_002157_120 Hb_013405_020--Hb_002157_120 Hb_006132_090 Hb_006132_090 Hb_013405_020--Hb_006132_090 Hb_004754_050 Hb_004754_050 Hb_013405_020--Hb_004754_050 Hb_007975_060--Hb_004754_050 Hb_000061_180 Hb_000061_180 Hb_007975_060--Hb_000061_180 Hb_007975_060--Hb_002157_120 Hb_133702_010 Hb_133702_010 Hb_007975_060--Hb_133702_010 Hb_000023_260 Hb_000023_260 Hb_007975_060--Hb_000023_260 Hb_000811_070 Hb_000811_070 Hb_008421_020--Hb_000811_070 Hb_001541_120 Hb_001541_120 Hb_008421_020--Hb_001541_120 Hb_003153_010 Hb_003153_010 Hb_008421_020--Hb_003153_010 Hb_004108_160 Hb_004108_160 Hb_008421_020--Hb_004108_160 Hb_008421_020--Hb_005016_040 Hb_000140_090 Hb_000140_090 Hb_005016_040--Hb_000140_090 Hb_005016_040--Hb_000811_070 Hb_005167_010 Hb_005167_010 Hb_005016_040--Hb_005167_010 Hb_000080_130 Hb_000080_130 Hb_005016_040--Hb_000080_130 Hb_000028_520 Hb_000028_520 Hb_002157_120--Hb_000028_520 Hb_002157_120--Hb_004754_050 Hb_000058_130 Hb_000058_130 Hb_002157_120--Hb_000058_130 Hb_002157_120--Hb_000061_180 Hb_013575_010 Hb_013575_010 Hb_002157_120--Hb_013575_010 Hb_006132_090--Hb_005167_010 Hb_001900_140 Hb_001900_140 Hb_006132_090--Hb_001900_140 Hb_003878_090 Hb_003878_090 Hb_006132_090--Hb_003878_090 Hb_006132_090--Hb_002157_120 Hb_007002_020 Hb_007002_020 Hb_006132_090--Hb_007002_020 Hb_003119_060 Hb_003119_060 Hb_006132_090--Hb_003119_060 Hb_019181_040 Hb_019181_040 Hb_004754_050--Hb_019181_040 Hb_004754_050--Hb_133702_010 Hb_001087_030 Hb_001087_030 Hb_004754_050--Hb_001087_030 Hb_004754_050--Hb_000058_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.58399 7.82192 14.2919 13.6654 6.4554 8.13891
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.15838 13.064 12.1668 4.78738 16.7443

CAGE analysis