Hb_003119_060

Information

Type -
Description -
Location Contig3119: 30571-35268
Sequence    

Annotation

kegg
ID tcc:TCM_007421
description Dicarboxylate transport 2.1
nr
ID XP_012069162.1
description PREDICTED: dicarboxylate transporter 2.1, chloroplastic [Jatropha curcas]
swissprot
ID Q9FMF7
description Dicarboxylate transporter 2.1, chloroplastic OS=Arabidopsis thaliana GN=DIT2-1 PE=1 SV=1
trembl
ID A0A067L9Y5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24928 PE=4 SV=1
Gene Ontology
ID GO:0009534
description dicarboxylate transporter chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32974: 30820-35235
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003119_060 0.0 - - PREDICTED: dicarboxylate transporter 2.1, chloroplastic [Jatropha curcas]
2 Hb_000890_130 0.0692405517 - - PREDICTED: probable serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit TON2 [Phoenix dactylifera]
3 Hb_002687_120 0.0728973356 - - PREDICTED: lipoyl synthase, chloroplastic [Jatropha curcas]
4 Hb_000028_520 0.0743131191 - - hypothetical protein L484_025125 [Morus notabilis]
5 Hb_006132_090 0.0755853903 - - PREDICTED: origin of replication complex subunit 5 isoform X1 [Jatropha curcas]
6 Hb_002157_120 0.0757703809 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000774_020 0.0819057982 - - PREDICTED: DNA damage-inducible protein 1 [Jatropha curcas]
8 Hb_005167_010 0.0838058671 - - PREDICTED: serine/threonine-protein kinase At5g01020 isoform X1 [Jatropha curcas]
9 Hb_001195_060 0.0854323558 - - Protein yrdA, putative [Ricinus communis]
10 Hb_004965_110 0.0865284534 - - PREDICTED: folylpolyglutamate synthase [Jatropha curcas]
11 Hb_007975_060 0.0884736454 - - PREDICTED: uncharacterized GPI-anchored protein At1g61900 isoform X2 [Jatropha curcas]
12 Hb_000200_300 0.0920799871 - - PREDICTED: uncharacterized protein LOC105636926 [Jatropha curcas]
13 Hb_004754_050 0.0928659652 - - PREDICTED: uncharacterized protein LOC104433925 [Eucalyptus grandis]
14 Hb_000260_460 0.0930699635 - - Ethanolamine-phosphate cytidylyltransferase, putative [Ricinus communis]
15 Hb_000080_130 0.0937257886 - - PREDICTED: TBC1 domain family member 22B [Jatropha curcas]
16 Hb_002304_150 0.0947420854 - - PREDICTED: protein IQ-DOMAIN 1-like isoform X1 [Jatropha curcas]
17 Hb_007904_230 0.0968151599 - - PREDICTED: D-cysteine desulfhydrase 2, mitochondrial [Jatropha curcas]
18 Hb_003266_030 0.0986573536 - - hypothetical protein POPTR_0002s05550g [Populus trichocarpa]
19 Hb_000003_780 0.0992578729 - - hexokinase [Manihot esculenta]
20 Hb_001863_380 0.0993376458 - - PREDICTED: 14-3-3 protein 7 [Jatropha curcas]

Gene co-expression network

sample Hb_003119_060 Hb_003119_060 Hb_000890_130 Hb_000890_130 Hb_003119_060--Hb_000890_130 Hb_002687_120 Hb_002687_120 Hb_003119_060--Hb_002687_120 Hb_000028_520 Hb_000028_520 Hb_003119_060--Hb_000028_520 Hb_006132_090 Hb_006132_090 Hb_003119_060--Hb_006132_090 Hb_002157_120 Hb_002157_120 Hb_003119_060--Hb_002157_120 Hb_000774_020 Hb_000774_020 Hb_003119_060--Hb_000774_020 Hb_000890_130--Hb_002687_120 Hb_002686_080 Hb_002686_080 Hb_000890_130--Hb_002686_080 Hb_000890_130--Hb_000028_520 Hb_000270_680 Hb_000270_680 Hb_000890_130--Hb_000270_680 Hb_002304_150 Hb_002304_150 Hb_000890_130--Hb_002304_150 Hb_003266_030 Hb_003266_030 Hb_002687_120--Hb_003266_030 Hb_002687_120--Hb_000028_520 Hb_000721_030 Hb_000721_030 Hb_002687_120--Hb_000721_030 Hb_002687_120--Hb_006132_090 Hb_000028_520--Hb_002157_120 Hb_018790_020 Hb_018790_020 Hb_000028_520--Hb_018790_020 Hb_000061_180 Hb_000061_180 Hb_000028_520--Hb_000061_180 Hb_001025_120 Hb_001025_120 Hb_000028_520--Hb_001025_120 Hb_000058_130 Hb_000058_130 Hb_000028_520--Hb_000058_130 Hb_005167_010 Hb_005167_010 Hb_006132_090--Hb_005167_010 Hb_001900_140 Hb_001900_140 Hb_006132_090--Hb_001900_140 Hb_003878_090 Hb_003878_090 Hb_006132_090--Hb_003878_090 Hb_006132_090--Hb_002157_120 Hb_007002_020 Hb_007002_020 Hb_006132_090--Hb_007002_020 Hb_004754_050 Hb_004754_050 Hb_002157_120--Hb_004754_050 Hb_007975_060 Hb_007975_060 Hb_002157_120--Hb_007975_060 Hb_002157_120--Hb_000058_130 Hb_002157_120--Hb_000061_180 Hb_013575_010 Hb_013575_010 Hb_002157_120--Hb_013575_010 Hb_005271_040 Hb_005271_040 Hb_000774_020--Hb_005271_040 Hb_002681_100 Hb_002681_100 Hb_000774_020--Hb_002681_100 Hb_000076_220 Hb_000076_220 Hb_000774_020--Hb_000076_220 Hb_010578_080 Hb_010578_080 Hb_000774_020--Hb_010578_080 Hb_000853_150 Hb_000853_150 Hb_000774_020--Hb_000853_150 Hb_000260_470 Hb_000260_470 Hb_000774_020--Hb_000260_470
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.0884 5.85796 24.4079 18.5364 8.40945 7.40205
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.65471 15.5448 13.8249 9.36913 15.3695

CAGE analysis