Hb_005271_040

Information

Type -
Description -
Location Contig5271: 34570-37898
Sequence    

Annotation

kegg
ID rcu:RCOM_1686380
description Serine racemase, putative (EC:4.3.1.19)
nr
ID XP_012086939.1
description PREDICTED: serine racemase [Jatropha curcas]
swissprot
ID Q2PGG3
description Serine racemase OS=Arabidopsis thaliana GN=SR PE=1 SV=1
trembl
ID A0A067K0X5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20610 PE=4 SV=1
Gene Ontology
ID GO:0004794
description serine racemase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47046: 34703-37892
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005271_040 0.0 - - PREDICTED: serine racemase [Jatropha curcas]
2 Hb_000260_470 0.0609174204 - - PREDICTED: uncharacterized protein LOC105649044 [Jatropha curcas]
3 Hb_000875_080 0.0658290834 - - PREDICTED: (+)-delta-cadinene synthase isozyme XC14-like isoform X2 [Gossypium raimondii]
4 Hb_163175_010 0.0696442958 - - hypothetical protein CISIN_1g036035mg, partial [Citrus sinensis]
5 Hb_002681_100 0.0702579532 - - PREDICTED: glucuronokinase 1 [Jatropha curcas]
6 Hb_000663_060 0.0709184014 - - hypothetical protein JCGZ_16277 [Jatropha curcas]
7 Hb_002272_050 0.0717454735 - - microsomal signal peptidase 23 kD subunit, putative [Ricinus communis]
8 Hb_000336_210 0.0719636042 - - PREDICTED: probable adenylate kinase 7, mitochondrial [Jatropha curcas]
9 Hb_000774_020 0.0731028489 - - PREDICTED: DNA damage-inducible protein 1 [Jatropha curcas]
10 Hb_000260_630 0.073229767 - - PREDICTED: altered inheritance rate of mitochondria protein 25 isoform X1 [Jatropha curcas]
11 Hb_001660_100 0.0750028226 - - PREDICTED: glyoxylate reductase/hydroxypyruvate reductase [Jatropha curcas]
12 Hb_000720_040 0.0761111483 - - PREDICTED: replication factor C subunit 2 [Jatropha curcas]
13 Hb_003861_060 0.0764011514 - - PREDICTED: treacle protein [Jatropha curcas]
14 Hb_000392_420 0.076643414 - - PREDICTED: probable aldehyde dehydrogenase isoform X1 [Jatropha curcas]
15 Hb_006570_160 0.0768099357 - - PREDICTED: putative ER lumen protein-retaining receptor C28H8.4 [Jatropha curcas]
16 Hb_003994_230 0.0769725555 - - 7-dehydrocholesterol reductase, putative [Ricinus communis]
17 Hb_008616_050 0.0771640972 - - PREDICTED: putative deoxyribonuclease TATDN1 [Jatropha curcas]
18 Hb_000905_110 0.0785772577 - - arginine/serine rich splicing factor sf4/14, putative [Ricinus communis]
19 Hb_002936_010 0.0787245813 - - PREDICTED: uncharacterized protein LOC103949110 [Pyrus x bretschneideri]
20 Hb_018790_020 0.0798572149 - - protein kinase, putative [Ricinus communis]

Gene co-expression network

sample Hb_005271_040 Hb_005271_040 Hb_000260_470 Hb_000260_470 Hb_005271_040--Hb_000260_470 Hb_000875_080 Hb_000875_080 Hb_005271_040--Hb_000875_080 Hb_163175_010 Hb_163175_010 Hb_005271_040--Hb_163175_010 Hb_002681_100 Hb_002681_100 Hb_005271_040--Hb_002681_100 Hb_000663_060 Hb_000663_060 Hb_005271_040--Hb_000663_060 Hb_002272_050 Hb_002272_050 Hb_005271_040--Hb_002272_050 Hb_001660_100 Hb_001660_100 Hb_000260_470--Hb_001660_100 Hb_006570_160 Hb_006570_160 Hb_000260_470--Hb_006570_160 Hb_159809_070 Hb_159809_070 Hb_000260_470--Hb_159809_070 Hb_079526_040 Hb_079526_040 Hb_000260_470--Hb_079526_040 Hb_000392_420 Hb_000392_420 Hb_000260_470--Hb_000392_420 Hb_000336_210 Hb_000336_210 Hb_000875_080--Hb_000336_210 Hb_000875_080--Hb_002272_050 Hb_000049_140 Hb_000049_140 Hb_000875_080--Hb_000049_140 Hb_000297_160 Hb_000297_160 Hb_000875_080--Hb_000297_160 Hb_171900_090 Hb_171900_090 Hb_000875_080--Hb_171900_090 Hb_164390_010 Hb_164390_010 Hb_163175_010--Hb_164390_010 Hb_163175_010--Hb_171900_090 Hb_000365_230 Hb_000365_230 Hb_163175_010--Hb_000365_230 Hb_001959_110 Hb_001959_110 Hb_163175_010--Hb_001959_110 Hb_183433_010 Hb_183433_010 Hb_163175_010--Hb_183433_010 Hb_004705_170 Hb_004705_170 Hb_163175_010--Hb_004705_170 Hb_003057_060 Hb_003057_060 Hb_002681_100--Hb_003057_060 Hb_013575_010 Hb_013575_010 Hb_002681_100--Hb_013575_010 Hb_004058_030 Hb_004058_030 Hb_002681_100--Hb_004058_030 Hb_001511_060 Hb_001511_060 Hb_002681_100--Hb_001511_060 Hb_003304_020 Hb_003304_020 Hb_002681_100--Hb_003304_020 Hb_006573_190 Hb_006573_190 Hb_002681_100--Hb_006573_190 Hb_001828_180 Hb_001828_180 Hb_000663_060--Hb_001828_180 Hb_000778_010 Hb_000778_010 Hb_000663_060--Hb_000778_010 Hb_001269_130 Hb_001269_130 Hb_000663_060--Hb_001269_130 Hb_000363_190 Hb_000363_190 Hb_000663_060--Hb_000363_190 Hb_023001_040 Hb_023001_040 Hb_000663_060--Hb_023001_040 Hb_000663_060--Hb_163175_010 Hb_002272_050--Hb_171900_090 Hb_002272_050--Hb_000336_210 Hb_000359_040 Hb_000359_040 Hb_002272_050--Hb_000359_040 Hb_002272_050--Hb_000297_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.13984 2.876 7.07971 5.81758 4.01005 3.2973
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.67587 5.23391 4.15877 5.63303 3.48628

CAGE analysis