Hb_006570_160

Information

Type -
Description -
Location Contig6570: 92274-97322
Sequence    

Annotation

kegg
ID csv:101215096
description ER lumen protein retaining receptor-like
nr
ID XP_012073800.1
description PREDICTED: putative ER lumen protein-retaining receptor C28H8.4 [Jatropha curcas]
swissprot
ID Q09473
description Putative ER lumen protein-retaining receptor C28H8.4 OS=Caenorhabditis elegans GN=C28H8.4 PE=3 SV=1
trembl
ID A0A067KYI3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08215 PE=4 SV=1
Gene Ontology
ID GO:0005783
description er lumen protein-retaining receptor

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52796: 92417-97203 , PASA_asmbl_52797: 94634-94777 , PASA_asmbl_52799: 96507-96680
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006570_160 0.0 - - PREDICTED: putative ER lumen protein-retaining receptor C28H8.4 [Jatropha curcas]
2 Hb_000260_470 0.0694430159 - - PREDICTED: uncharacterized protein LOC105649044 [Jatropha curcas]
3 Hb_011282_060 0.076244304 - - PREDICTED: bifunctional dihydrofolate reductase-thymidylate synthase 1 [Jatropha curcas]
4 Hb_005271_040 0.0768099357 - - PREDICTED: serine racemase [Jatropha curcas]
5 Hb_010407_140 0.0833312931 - - PREDICTED: malate dehydrogenase [Jatropha curcas]
6 Hb_002676_120 0.0895282572 - - hypothetical protein POPTR_0002s23750g [Populus trichocarpa]
7 Hb_000666_100 0.0924433561 - - Actin-related protein 2/3 complex subunit 2 isoform 2 [Theobroma cacao]
8 Hb_001660_100 0.0926179225 - - PREDICTED: glyoxylate reductase/hydroxypyruvate reductase [Jatropha curcas]
9 Hb_159809_070 0.0935628845 - - phospholipase A-2-activating protein, putative [Ricinus communis]
10 Hb_001227_120 0.0946359634 transcription factor TF Family: C2H2 Histone deacetylase 2a, putative [Ricinus communis]
11 Hb_003605_020 0.0965112624 - - exocyst complex component sec6, putative [Ricinus communis]
12 Hb_004545_110 0.0999756088 - - DHHC-type zinc finger family protein isoform 1 [Theobroma cacao]
13 Hb_000663_060 0.1005376045 - - hypothetical protein JCGZ_16277 [Jatropha curcas]
14 Hb_000774_020 0.1005728863 - - PREDICTED: DNA damage-inducible protein 1 [Jatropha curcas]
15 Hb_000830_020 0.1018948738 - - PREDICTED: 7-methylguanosine phosphate-specific 5'-nucleotidase A isoform X2 [Jatropha curcas]
16 Hb_003207_180 0.1019100672 - - PREDICTED: uncharacterized protein LOC105645887 isoform X2 [Jatropha curcas]
17 Hb_002687_120 0.1022769628 - - PREDICTED: lipoyl synthase, chloroplastic [Jatropha curcas]
18 Hb_133004_010 0.1023163661 - - PREDICTED: cyclin-D3-3 [Jatropha curcas]
19 Hb_000130_270 0.1028254475 - - PREDICTED: malate dehydrogenase, mitochondrial [Jatropha curcas]
20 Hb_007850_030 0.1031855344 - - PREDICTED: uncharacterized protein LOC105640669 [Jatropha curcas]

Gene co-expression network

sample Hb_006570_160 Hb_006570_160 Hb_000260_470 Hb_000260_470 Hb_006570_160--Hb_000260_470 Hb_011282_060 Hb_011282_060 Hb_006570_160--Hb_011282_060 Hb_005271_040 Hb_005271_040 Hb_006570_160--Hb_005271_040 Hb_010407_140 Hb_010407_140 Hb_006570_160--Hb_010407_140 Hb_002676_120 Hb_002676_120 Hb_006570_160--Hb_002676_120 Hb_000666_100 Hb_000666_100 Hb_006570_160--Hb_000666_100 Hb_000260_470--Hb_005271_040 Hb_001660_100 Hb_001660_100 Hb_000260_470--Hb_001660_100 Hb_159809_070 Hb_159809_070 Hb_000260_470--Hb_159809_070 Hb_079526_040 Hb_079526_040 Hb_000260_470--Hb_079526_040 Hb_000392_420 Hb_000392_420 Hb_000260_470--Hb_000392_420 Hb_052805_010 Hb_052805_010 Hb_011282_060--Hb_052805_010 Hb_003528_030 Hb_003528_030 Hb_011282_060--Hb_003528_030 Hb_001227_130 Hb_001227_130 Hb_011282_060--Hb_001227_130 Hb_001269_330 Hb_001269_330 Hb_011282_060--Hb_001269_330 Hb_011282_060--Hb_010407_140 Hb_000875_080 Hb_000875_080 Hb_005271_040--Hb_000875_080 Hb_163175_010 Hb_163175_010 Hb_005271_040--Hb_163175_010 Hb_002681_100 Hb_002681_100 Hb_005271_040--Hb_002681_100 Hb_000663_060 Hb_000663_060 Hb_005271_040--Hb_000663_060 Hb_002272_050 Hb_002272_050 Hb_005271_040--Hb_002272_050 Hb_007894_010 Hb_007894_010 Hb_010407_140--Hb_007894_010 Hb_001633_080 Hb_001633_080 Hb_010407_140--Hb_001633_080 Hb_000197_020 Hb_000197_020 Hb_010407_140--Hb_000197_020 Hb_000127_140 Hb_000127_140 Hb_010407_140--Hb_000127_140 Hb_000987_040 Hb_000987_040 Hb_002676_120--Hb_000987_040 Hb_009193_090 Hb_009193_090 Hb_002676_120--Hb_009193_090 Hb_000395_280 Hb_000395_280 Hb_002676_120--Hb_000395_280 Hb_005754_040 Hb_005754_040 Hb_002676_120--Hb_005754_040 Hb_005333_060 Hb_005333_060 Hb_002676_120--Hb_005333_060 Hb_004545_110 Hb_004545_110 Hb_000666_100--Hb_004545_110 Hb_003057_060 Hb_003057_060 Hb_000666_100--Hb_003057_060 Hb_013575_010 Hb_013575_010 Hb_000666_100--Hb_013575_010 Hb_008616_050 Hb_008616_050 Hb_000666_100--Hb_008616_050 Hb_000200_020 Hb_000200_020 Hb_000666_100--Hb_000200_020 Hb_002641_060 Hb_002641_060 Hb_000666_100--Hb_002641_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.5184 3.93742 16.5408 15.0365 7.39575 6.65691
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.11284 8.45998 7.47238 11.1023 7.32584

CAGE analysis