Hb_001633_080

Information

Type -
Description -
Location Contig1633: 66743-71530
Sequence    

Annotation

kegg
ID cic:CICLE_v10015638mg
description hypothetical protein
nr
ID XP_012489465.1
description PREDICTED: V-type proton ATPase subunit C [Gossypium raimondii]
swissprot
ID Q9SDS7
description V-type proton ATPase subunit C OS=Arabidopsis thaliana GN=VHA-C PE=1 SV=1
trembl
ID A0A0D2QN50
description Gossypium raimondii chromosome 7, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_007G072500 PE=4 SV=1
Gene Ontology
ID GO:0000221
description v-type proton atpase subunit c

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14885: 66765-71498
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001633_080 0.0 - - PREDICTED: V-type proton ATPase subunit C [Gossypium raimondii]
2 Hb_003998_040 0.0684925765 - - organic anion transporter, putative [Ricinus communis]
3 Hb_009193_090 0.0751893715 - - PREDICTED: protein root UVB sensitive 3 isoform X1 [Jatropha curcas]
4 Hb_010407_140 0.0769529443 - - PREDICTED: malate dehydrogenase [Jatropha curcas]
5 Hb_003988_050 0.0779939107 - - PREDICTED: zinc finger protein-like 1 homolog [Jatropha curcas]
6 Hb_001957_010 0.0861721882 - - PREDICTED: probable sugar phosphate/phosphate translocator At3g14410 isoform X1 [Jatropha curcas]
7 Hb_062537_010 0.0871879141 - - hypothetical protein JCGZ_13884 [Jatropha curcas]
8 Hb_000703_330 0.0878046772 - - conserved hypothetical protein [Ricinus communis]
9 Hb_011214_160 0.0903394552 - - PREDICTED: coatomer subunit delta [Jatropha curcas]
10 Hb_007481_010 0.0909400567 - - PREDICTED: TBC1 domain family member 22B [Jatropha curcas]
11 Hb_000395_280 0.096633309 - - PREDICTED: thioredoxin-related transmembrane protein 2 [Vitis vinifera]
12 Hb_001227_120 0.0970486614 transcription factor TF Family: C2H2 Histone deacetylase 2a, putative [Ricinus communis]
13 Hb_159809_070 0.0972759428 - - phospholipase A-2-activating protein, putative [Ricinus communis]
14 Hb_000023_300 0.0973703815 - - Ubiquitin carboxyl-terminal hydrolase, putative [Ricinus communis]
15 Hb_000917_130 0.0973906902 - - PREDICTED: uncharacterized protein LOC105635730 [Jatropha curcas]
16 Hb_000787_160 0.0981639376 - - PREDICTED: GDP-mannose transporter GONST1 isoform X1 [Jatropha curcas]
17 Hb_002676_120 0.0983536748 - - hypothetical protein POPTR_0002s23750g [Populus trichocarpa]
18 Hb_000322_080 0.098442664 - - hypothetical protein JCGZ_07423 [Jatropha curcas]
19 Hb_000197_020 0.0990148224 - - PREDICTED: protein RER1A [Jatropha curcas]
20 Hb_005701_120 0.0996027067 - - PREDICTED: V-type proton ATPase 16 kDa proteolipid subunit [Cucumis sativus]

Gene co-expression network

sample Hb_001633_080 Hb_001633_080 Hb_003998_040 Hb_003998_040 Hb_001633_080--Hb_003998_040 Hb_009193_090 Hb_009193_090 Hb_001633_080--Hb_009193_090 Hb_010407_140 Hb_010407_140 Hb_001633_080--Hb_010407_140 Hb_003988_050 Hb_003988_050 Hb_001633_080--Hb_003988_050 Hb_001957_010 Hb_001957_010 Hb_001633_080--Hb_001957_010 Hb_062537_010 Hb_062537_010 Hb_001633_080--Hb_062537_010 Hb_000066_030 Hb_000066_030 Hb_003998_040--Hb_000066_030 Hb_005218_020 Hb_005218_020 Hb_003998_040--Hb_005218_020 Hb_011214_160 Hb_011214_160 Hb_003998_040--Hb_011214_160 Hb_007765_040 Hb_007765_040 Hb_003998_040--Hb_007765_040 Hb_000371_090 Hb_000371_090 Hb_003998_040--Hb_000371_090 Hb_007545_120 Hb_007545_120 Hb_009193_090--Hb_007545_120 Hb_002676_120 Hb_002676_120 Hb_009193_090--Hb_002676_120 Hb_002686_200 Hb_002686_200 Hb_009193_090--Hb_002686_200 Hb_159809_070 Hb_159809_070 Hb_009193_090--Hb_159809_070 Hb_006570_160 Hb_006570_160 Hb_009193_090--Hb_006570_160 Hb_007894_010 Hb_007894_010 Hb_010407_140--Hb_007894_010 Hb_000197_020 Hb_000197_020 Hb_010407_140--Hb_000197_020 Hb_010407_140--Hb_006570_160 Hb_000127_140 Hb_000127_140 Hb_010407_140--Hb_000127_140 Hb_011282_060 Hb_011282_060 Hb_010407_140--Hb_011282_060 Hb_000115_150 Hb_000115_150 Hb_003988_050--Hb_000115_150 Hb_000165_080 Hb_000165_080 Hb_003988_050--Hb_000165_080 Hb_002902_130 Hb_002902_130 Hb_003988_050--Hb_002902_130 Hb_000258_240 Hb_000258_240 Hb_003988_050--Hb_000258_240 Hb_000025_190 Hb_000025_190 Hb_003988_050--Hb_000025_190 Hb_065968_010 Hb_065968_010 Hb_001957_010--Hb_065968_010 Hb_003605_020 Hb_003605_020 Hb_001957_010--Hb_003605_020 Hb_000197_190 Hb_000197_190 Hb_001957_010--Hb_000197_190 Hb_001507_120 Hb_001507_120 Hb_001957_010--Hb_001507_120 Hb_000395_280 Hb_000395_280 Hb_001957_010--Hb_000395_280 Hb_003994_030 Hb_003994_030 Hb_001957_010--Hb_003994_030 Hb_062537_010--Hb_000025_190 Hb_001348_020 Hb_001348_020 Hb_062537_010--Hb_001348_020 Hb_062537_010--Hb_000115_150 Hb_023001_040 Hb_023001_040 Hb_062537_010--Hb_023001_040 Hb_062537_010--Hb_003988_050 Hb_062537_010--Hb_000258_240
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.51012 5.92407 14.8818 25.2104 6.33743 8.93464
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.26416 9.65147 8.16271 16.3024 9.68627

CAGE analysis