Hb_000115_150

Information

Type -
Description -
Location Contig115: 114751-120569
Sequence    

Annotation

kegg
ID rcu:RCOM_0055640
description protein with unknown function
nr
ID XP_012082098.1
description PREDICTED: IST1 homolog [Jatropha curcas]
swissprot
ID Q3ZBV1
description IST1 homolog OS=Bos taurus GN=IST1 PE=2 SV=1
trembl
ID A0A067KC50
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18335 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04524: 114762-116763 , PASA_asmbl_04526: 119098-119438
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000115_150 0.0 - - PREDICTED: IST1 homolog [Jatropha curcas]
2 Hb_000120_370 0.0610137267 - - type 2 diacylglycerol acyltransferase [Ricinus communis]
3 Hb_003988_050 0.0686177038 - - PREDICTED: zinc finger protein-like 1 homolog [Jatropha curcas]
4 Hb_062537_010 0.0737500874 - - hypothetical protein JCGZ_13884 [Jatropha curcas]
5 Hb_001104_100 0.0748708026 - - RecName: Full=Enolase 2; AltName: Full=2-phospho-D-glycerate hydro-lyase 2; AltName: Full=2-phosphoglycerate dehydratase 2; AltName: Allergen=Hev b 9 [Hevea brasiliensis]
6 Hb_005648_010 0.0770398641 - - PREDICTED: malate dehydrogenase, glyoxysomal isoform X1 [Jatropha curcas]
7 Hb_000025_190 0.0801991992 - - 26S proteasome non-atpase regulatory subunit, putative [Ricinus communis]
8 Hb_009787_030 0.081402197 - - Prolactin regulatory element-binding protein, putative [Ricinus communis]
9 Hb_002093_060 0.0845515787 - - phosphoprotein phosphatase, putative [Ricinus communis]
10 Hb_001348_020 0.0886635934 - - PREDICTED: uncharacterized protein LOC105638926 isoform X2 [Jatropha curcas]
11 Hb_004668_090 0.0942292867 - - PREDICTED: uncharacterized protein LOC105630440 [Jatropha curcas]
12 Hb_001104_230 0.0951492762 - - PREDICTED: fructose-bisphosphate aldolase cytoplasmic isozyme [Jatropha curcas]
13 Hb_005725_130 0.0966613648 - - PREDICTED: uncharacterized protein KIAA0930 homolog isoform X2 [Jatropha curcas]
14 Hb_001085_240 0.0973137091 - - PREDICTED: probable calcium-binding protein CML22 isoform X1 [Jatropha curcas]
15 Hb_007383_020 0.0976799193 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000028_600 0.0988032043 - - glutaredoxin-1, grx1, putative [Ricinus communis]
17 Hb_007481_010 0.0999526836 - - PREDICTED: TBC1 domain family member 22B [Jatropha curcas]
18 Hb_066842_010 0.099976225 - - PREDICTED: probable 6-phosphogluconolactonase 4, chloroplastic [Jatropha curcas]
19 Hb_008103_050 0.1010132786 - - hypothetical protein JCGZ_07422 [Jatropha curcas]
20 Hb_000136_100 0.1016173571 - - PREDICTED: syntaxin-61 [Jatropha curcas]

Gene co-expression network

sample Hb_000115_150 Hb_000115_150 Hb_000120_370 Hb_000120_370 Hb_000115_150--Hb_000120_370 Hb_003988_050 Hb_003988_050 Hb_000115_150--Hb_003988_050 Hb_062537_010 Hb_062537_010 Hb_000115_150--Hb_062537_010 Hb_001104_100 Hb_001104_100 Hb_000115_150--Hb_001104_100 Hb_005648_010 Hb_005648_010 Hb_000115_150--Hb_005648_010 Hb_000025_190 Hb_000025_190 Hb_000115_150--Hb_000025_190 Hb_005725_130 Hb_005725_130 Hb_000120_370--Hb_005725_130 Hb_001828_180 Hb_001828_180 Hb_000120_370--Hb_001828_180 Hb_002301_100 Hb_002301_100 Hb_000120_370--Hb_002301_100 Hb_000167_010 Hb_000167_010 Hb_000120_370--Hb_000167_010 Hb_000120_370--Hb_005648_010 Hb_000165_080 Hb_000165_080 Hb_003988_050--Hb_000165_080 Hb_002902_130 Hb_002902_130 Hb_003988_050--Hb_002902_130 Hb_001633_080 Hb_001633_080 Hb_003988_050--Hb_001633_080 Hb_000258_240 Hb_000258_240 Hb_003988_050--Hb_000258_240 Hb_003988_050--Hb_000025_190 Hb_062537_010--Hb_000025_190 Hb_001348_020 Hb_001348_020 Hb_062537_010--Hb_001348_020 Hb_023001_040 Hb_023001_040 Hb_062537_010--Hb_023001_040 Hb_062537_010--Hb_003988_050 Hb_062537_010--Hb_000258_240 Hb_001085_240 Hb_001085_240 Hb_001104_100--Hb_001085_240 Hb_002675_140 Hb_002675_140 Hb_001104_100--Hb_002675_140 Hb_001104_230 Hb_001104_230 Hb_001104_100--Hb_001104_230 Hb_000094_210 Hb_000094_210 Hb_001104_100--Hb_000094_210 Hb_002093_060 Hb_002093_060 Hb_001104_100--Hb_002093_060 Hb_005648_010--Hb_002093_060 Hb_002357_060 Hb_002357_060 Hb_005648_010--Hb_002357_060 Hb_004880_150 Hb_004880_150 Hb_005648_010--Hb_004880_150 Hb_005648_010--Hb_000025_190 Hb_002660_170 Hb_002660_170 Hb_000025_190--Hb_002660_170 Hb_000025_190--Hb_004880_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.50289 2.16616 3.93283 9.51225 3.31562 3.77475
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.8824 4.22477 3.56608 7.96974 5.13301

CAGE analysis