Hb_003988_050

Information

Type -
Description -
Location Contig3988: 45329-53322
Sequence    

Annotation

kegg
ID vvi:100242874
description zinc finger protein-like 1
nr
ID XP_012093111.1
description PREDICTED: zinc finger protein-like 1 homolog [Jatropha curcas]
swissprot
ID A8X2R2
description Zinc finger protein-like 1 homolog OS=Caenorhabditis briggsae GN=CBG06644 PE=3 SV=1
trembl
ID A0A067LIN0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16318 PE=4 SV=1
Gene Ontology
ID GO:0008270
description zinc finger 1 homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39688: 47268-53289
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003988_050 0.0 - - PREDICTED: zinc finger protein-like 1 homolog [Jatropha curcas]
2 Hb_000115_150 0.0686177038 - - PREDICTED: IST1 homolog [Jatropha curcas]
3 Hb_000165_080 0.0697174844 - - PREDICTED: multiple inositol polyphosphate phosphatase 1 isoform X1 [Jatropha curcas]
4 Hb_002902_130 0.0720652274 - - PREDICTED: molybdate-anion transporter [Jatropha curcas]
5 Hb_001633_080 0.0779939107 - - PREDICTED: V-type proton ATPase subunit C [Gossypium raimondii]
6 Hb_000258_240 0.0782848373 - - sur2 hydroxylase/desaturase, putative [Ricinus communis]
7 Hb_000025_190 0.0784563162 - - 26S proteasome non-atpase regulatory subunit, putative [Ricinus communis]
8 Hb_005701_120 0.079080621 - - PREDICTED: V-type proton ATPase 16 kDa proteolipid subunit [Cucumis sativus]
9 Hb_062537_010 0.0800020672 - - hypothetical protein JCGZ_13884 [Jatropha curcas]
10 Hb_003998_040 0.0815737848 - - organic anion transporter, putative [Ricinus communis]
11 Hb_005648_010 0.0853014215 - - PREDICTED: malate dehydrogenase, glyoxysomal isoform X1 [Jatropha curcas]
12 Hb_000120_370 0.0857886146 - - type 2 diacylglycerol acyltransferase [Ricinus communis]
13 Hb_002093_060 0.0861015171 - - phosphoprotein phosphatase, putative [Ricinus communis]
14 Hb_001021_010 0.0865801048 - - PREDICTED: bifunctional protein FolD 2 [Jatropha curcas]
15 Hb_000046_170 0.0873449233 - - PREDICTED: uncharacterized protein LOC105631841 isoform X1 [Jatropha curcas]
16 Hb_007481_010 0.0900278396 - - PREDICTED: TBC1 domain family member 22B [Jatropha curcas]
17 Hb_000028_600 0.0902224374 - - glutaredoxin-1, grx1, putative [Ricinus communis]
18 Hb_000928_190 0.0905816768 - - PREDICTED: putative acyl-activating enzyme 19 isoform X1 [Jatropha curcas]
19 Hb_001104_230 0.0907829652 - - PREDICTED: fructose-bisphosphate aldolase cytoplasmic isozyme [Jatropha curcas]
20 Hb_000703_330 0.091535943 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_003988_050 Hb_003988_050 Hb_000115_150 Hb_000115_150 Hb_003988_050--Hb_000115_150 Hb_000165_080 Hb_000165_080 Hb_003988_050--Hb_000165_080 Hb_002902_130 Hb_002902_130 Hb_003988_050--Hb_002902_130 Hb_001633_080 Hb_001633_080 Hb_003988_050--Hb_001633_080 Hb_000258_240 Hb_000258_240 Hb_003988_050--Hb_000258_240 Hb_000025_190 Hb_000025_190 Hb_003988_050--Hb_000025_190 Hb_000120_370 Hb_000120_370 Hb_000115_150--Hb_000120_370 Hb_062537_010 Hb_062537_010 Hb_000115_150--Hb_062537_010 Hb_001104_100 Hb_001104_100 Hb_000115_150--Hb_001104_100 Hb_005648_010 Hb_005648_010 Hb_000115_150--Hb_005648_010 Hb_000115_150--Hb_000025_190 Hb_000367_090 Hb_000367_090 Hb_000165_080--Hb_000367_090 Hb_000703_330 Hb_000703_330 Hb_000165_080--Hb_000703_330 Hb_000046_170 Hb_000046_170 Hb_000165_080--Hb_000046_170 Hb_028487_160 Hb_028487_160 Hb_000165_080--Hb_028487_160 Hb_000227_160 Hb_000227_160 Hb_000165_080--Hb_000227_160 Hb_003097_140 Hb_003097_140 Hb_002902_130--Hb_003097_140 Hb_000365_400 Hb_000365_400 Hb_002902_130--Hb_000365_400 Hb_000390_050 Hb_000390_050 Hb_002902_130--Hb_000390_050 Hb_001703_050 Hb_001703_050 Hb_002902_130--Hb_001703_050 Hb_000389_030 Hb_000389_030 Hb_002902_130--Hb_000389_030 Hb_003998_040 Hb_003998_040 Hb_001633_080--Hb_003998_040 Hb_009193_090 Hb_009193_090 Hb_001633_080--Hb_009193_090 Hb_010407_140 Hb_010407_140 Hb_001633_080--Hb_010407_140 Hb_001957_010 Hb_001957_010 Hb_001633_080--Hb_001957_010 Hb_001633_080--Hb_062537_010 Hb_002781_030 Hb_002781_030 Hb_000258_240--Hb_002781_030 Hb_003529_030 Hb_003529_030 Hb_000258_240--Hb_003529_030 Hb_000258_240--Hb_062537_010 Hb_000928_190 Hb_000928_190 Hb_000258_240--Hb_000928_190 Hb_000258_240--Hb_000025_190 Hb_000025_190--Hb_062537_010 Hb_002660_170 Hb_002660_170 Hb_000025_190--Hb_002660_170 Hb_004880_150 Hb_004880_150 Hb_000025_190--Hb_004880_150 Hb_000025_190--Hb_005648_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.72975 2.29128 3.3521 8.58466 2.36068 2.84992
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.17577 2.85523 2.56898 5.69549 3.77462

CAGE analysis