Hb_003529_030

Information

Type -
Description -
Location Contig3529: 47994-52607
Sequence    

Annotation

kegg
ID rcu:RCOM_1374720
description Non-imprinted in Prader-Willi/Angelman syndrome region protein, putative
nr
ID XP_002529005.1
description Non-imprinted in Prader-Willi/Angelman syndrome region protein, putative [Ricinus communis]
swissprot
ID Q94AH3
description Probable magnesium transporter NIPA4 OS=Arabidopsis thaliana GN=At1g71900 PE=2 SV=1
trembl
ID B9SSN6
description Non-imprinted in Prader-Willi/Angelman syndrome region protein, putative OS=Ricinus communis GN=RCOM_1374720 PE=4 SV=1
Gene Ontology
ID GO:0016021
description probable magnesium transporter nipa4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36638: 47727-48472 , PASA_asmbl_36639: 52040-52211 , PASA_asmbl_36640: 52213-52322
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003529_030 0.0 - - Non-imprinted in Prader-Willi/Angelman syndrome region protein, putative [Ricinus communis]
2 Hb_000258_240 0.0722838705 - - sur2 hydroxylase/desaturase, putative [Ricinus communis]
3 Hb_000917_130 0.0763407126 - - PREDICTED: uncharacterized protein LOC105635730 [Jatropha curcas]
4 Hb_000477_100 0.0773591663 - - PREDICTED: GDP-mannose transporter GONST4 [Jatropha curcas]
5 Hb_000060_050 0.0798271773 - - PREDICTED: uncharacterized protein LOC105649718 [Jatropha curcas]
6 Hb_004129_140 0.0838131573 - - PREDICTED: probable sugar phosphate/phosphate translocator At1g06470 [Jatropha curcas]
7 Hb_005504_050 0.0865210469 - - putative protein [Arabidopsis thaliana]
8 Hb_007416_090 0.0879706743 - - UDP-sugar transporter, putative [Ricinus communis]
9 Hb_005218_020 0.0905377175 - - Uncharacterized protein isoform 3 [Theobroma cacao]
10 Hb_003305_040 0.0906745214 - - AP47/50p mRNA family protein [Populus trichocarpa]
11 Hb_003097_140 0.0935146017 - - PREDICTED: glycosyltransferase-like KOBITO 1 [Jatropha curcas]
12 Hb_000069_210 0.0936945492 - - PREDICTED: exportin-2 [Jatropha curcas]
13 Hb_000025_190 0.0942774933 - - 26S proteasome non-atpase regulatory subunit, putative [Ricinus communis]
14 Hb_000748_030 0.0947878605 - - ATP binding protein, putative [Ricinus communis]
15 Hb_001936_130 0.0960547114 - - PREDICTED: signal recognition particle receptor subunit beta-like [Jatropha curcas]
16 Hb_004055_120 0.0972567855 - - PREDICTED: uncharacterized protein LOC105631443 [Jatropha curcas]
17 Hb_005701_120 0.0974116488 - - PREDICTED: V-type proton ATPase 16 kDa proteolipid subunit [Cucumis sativus]
18 Hb_003025_100 0.097422357 - - PREDICTED: serine/threonine-protein phosphatase 5 isoform X2 [Jatropha curcas]
19 Hb_000256_150 0.0977593919 - - PREDICTED: trafficking protein particle complex II-specific subunit 120 homolog [Jatropha curcas]
20 Hb_185255_010 0.0980924886 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 11-like [Jatropha curcas]

Gene co-expression network

sample Hb_003529_030 Hb_003529_030 Hb_000258_240 Hb_000258_240 Hb_003529_030--Hb_000258_240 Hb_000917_130 Hb_000917_130 Hb_003529_030--Hb_000917_130 Hb_000477_100 Hb_000477_100 Hb_003529_030--Hb_000477_100 Hb_000060_050 Hb_000060_050 Hb_003529_030--Hb_000060_050 Hb_004129_140 Hb_004129_140 Hb_003529_030--Hb_004129_140 Hb_005504_050 Hb_005504_050 Hb_003529_030--Hb_005504_050 Hb_002781_030 Hb_002781_030 Hb_000258_240--Hb_002781_030 Hb_003988_050 Hb_003988_050 Hb_000258_240--Hb_003988_050 Hb_062537_010 Hb_062537_010 Hb_000258_240--Hb_062537_010 Hb_000928_190 Hb_000928_190 Hb_000258_240--Hb_000928_190 Hb_000025_190 Hb_000025_190 Hb_000258_240--Hb_000025_190 Hb_004055_120 Hb_004055_120 Hb_000917_130--Hb_004055_120 Hb_003998_040 Hb_003998_040 Hb_000917_130--Hb_003998_040 Hb_005218_020 Hb_005218_020 Hb_000917_130--Hb_005218_020 Hb_000256_150 Hb_000256_150 Hb_000917_130--Hb_000256_150 Hb_000917_130--Hb_000477_100 Hb_007481_010 Hb_007481_010 Hb_000477_100--Hb_007481_010 Hb_000046_500 Hb_000046_500 Hb_000477_100--Hb_000046_500 Hb_000352_300 Hb_000352_300 Hb_000477_100--Hb_000352_300 Hb_000146_040 Hb_000146_040 Hb_000477_100--Hb_000146_040 Hb_003097_140 Hb_003097_140 Hb_000477_100--Hb_003097_140 Hb_001051_070 Hb_001051_070 Hb_000477_100--Hb_001051_070 Hb_003305_040 Hb_003305_040 Hb_000060_050--Hb_003305_040 Hb_001489_110 Hb_001489_110 Hb_000060_050--Hb_001489_110 Hb_002660_170 Hb_002660_170 Hb_000060_050--Hb_002660_170 Hb_000212_450 Hb_000212_450 Hb_000060_050--Hb_000212_450 Hb_000252_100 Hb_000252_100 Hb_000060_050--Hb_000252_100 Hb_000173_410 Hb_000173_410 Hb_000060_050--Hb_000173_410 Hb_002304_040 Hb_002304_040 Hb_004129_140--Hb_002304_040 Hb_000062_540 Hb_000062_540 Hb_004129_140--Hb_000062_540 Hb_000300_630 Hb_000300_630 Hb_004129_140--Hb_000300_630 Hb_009661_030 Hb_009661_030 Hb_004129_140--Hb_009661_030 Hb_004129_140--Hb_005504_050 Hb_000487_270 Hb_000487_270 Hb_005504_050--Hb_000487_270 Hb_008279_040 Hb_008279_040 Hb_005504_050--Hb_008279_040 Hb_004627_040 Hb_004627_040 Hb_005504_050--Hb_004627_040 Hb_185255_010 Hb_185255_010 Hb_005504_050--Hb_185255_010 Hb_004607_090 Hb_004607_090 Hb_005504_050--Hb_004607_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.61226 2.89859 3.41848 11.9077 3.60371 4.72
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.67965 5.11392 6.10295 5.46521 6.26536

CAGE analysis