Hb_008279_040

Information

Type -
Description -
Location Contig8279: 35267-38666
Sequence    

Annotation

kegg
ID rcu:RCOM_1152920
description rer1 protein, putative
nr
ID XP_007047374.1
description Rer1 family protein isoform 2 [Theobroma cacao]
swissprot
ID O48670
description Protein RER1A OS=Arabidopsis thaliana GN=RER1A PE=1 SV=1
trembl
ID A0A061DNI8
description Rer1 family protein isoform 2 OS=Theobroma cacao GN=TCM_000685 PE=4 SV=1
Gene Ontology
ID GO:0005622
description protein rer1a-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59747: 35328-38662
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008279_040 0.0 - - Rer1 family protein isoform 2 [Theobroma cacao]
2 Hb_001259_050 0.0411421109 - - calcium lipid binding protein, putative [Ricinus communis]
3 Hb_003607_130 0.0594013757 - - serine/threonine protein kinase, putative [Ricinus communis]
4 Hb_000487_270 0.0637715089 - - hypothetical protein JCGZ_22651 [Jatropha curcas]
5 Hb_010515_020 0.0683970724 - - PREDICTED: protein transport protein SEC23-like [Jatropha curcas]
6 Hb_001679_050 0.0691988561 - - PREDICTED: exocyst complex component EXO84B [Jatropha curcas]
7 Hb_002071_070 0.0721584376 transcription factor TF Family: RB conserved hypothetical protein [Ricinus communis]
8 Hb_000778_010 0.0732895253 - - hypothetical protein [Bacillus subtilis]
9 Hb_004990_010 0.0739785881 - - PREDICTED: BTB/POZ and MATH domain-containing protein 4 [Jatropha curcas]
10 Hb_000029_060 0.0747302149 - - PREDICTED: mRNA-decapping enzyme-like protein [Jatropha curcas]
11 Hb_000574_450 0.0748659829 - - PREDICTED: signal recognition particle 54 kDa protein 2 [Jatropha curcas]
12 Hb_000567_230 0.0760934785 - - PREDICTED: peroxisome biogenesis protein 7 [Jatropha curcas]
13 Hb_002989_020 0.0764358216 - - PREDICTED: uncharacterized protein LOC105630013 isoform X2 [Jatropha curcas]
14 Hb_002830_010 0.0768616542 - - PREDICTED: TBCC domain-containing protein 1 [Jatropha curcas]
15 Hb_000347_250 0.0769177544 - - PREDICTED: uncharacterized protein LOC105133971 [Populus euphratica]
16 Hb_006452_120 0.0784634936 - - PREDICTED: protein FAM188A [Jatropha curcas]
17 Hb_020178_040 0.079078557 - - conserved hypothetical protein [Ricinus communis]
18 Hb_019181_040 0.0794190952 - - component of oligomeric golgi complex, putative [Ricinus communis]
19 Hb_000340_530 0.0798539168 - - hypothetical protein VITISV_016664 [Vitis vinifera]
20 Hb_000349_260 0.0798728858 - - PREDICTED: transmembrane protein 64 [Jatropha curcas]

Gene co-expression network

sample Hb_008279_040 Hb_008279_040 Hb_001259_050 Hb_001259_050 Hb_008279_040--Hb_001259_050 Hb_003607_130 Hb_003607_130 Hb_008279_040--Hb_003607_130 Hb_000487_270 Hb_000487_270 Hb_008279_040--Hb_000487_270 Hb_010515_020 Hb_010515_020 Hb_008279_040--Hb_010515_020 Hb_001679_050 Hb_001679_050 Hb_008279_040--Hb_001679_050 Hb_002071_070 Hb_002071_070 Hb_008279_040--Hb_002071_070 Hb_001259_050--Hb_003607_130 Hb_000029_060 Hb_000029_060 Hb_001259_050--Hb_000029_060 Hb_033006_030 Hb_033006_030 Hb_001259_050--Hb_033006_030 Hb_000347_250 Hb_000347_250 Hb_001259_050--Hb_000347_250 Hb_000567_230 Hb_000567_230 Hb_001259_050--Hb_000567_230 Hb_000173_470 Hb_000173_470 Hb_003607_130--Hb_000173_470 Hb_005245_100 Hb_005245_100 Hb_003607_130--Hb_005245_100 Hb_001717_010 Hb_001717_010 Hb_003607_130--Hb_001717_010 Hb_020178_040 Hb_020178_040 Hb_003607_130--Hb_020178_040 Hb_000574_450 Hb_000574_450 Hb_000487_270--Hb_000574_450 Hb_004990_010 Hb_004990_010 Hb_000487_270--Hb_004990_010 Hb_000487_270--Hb_010515_020 Hb_000208_280 Hb_000208_280 Hb_000487_270--Hb_000208_280 Hb_000487_270--Hb_001679_050 Hb_006452_120 Hb_006452_120 Hb_010515_020--Hb_006452_120 Hb_010515_020--Hb_000574_450 Hb_002989_020 Hb_002989_020 Hb_010515_020--Hb_002989_020 Hb_011063_050 Hb_011063_050 Hb_010515_020--Hb_011063_050 Hb_029243_030 Hb_029243_030 Hb_010515_020--Hb_029243_030 Hb_002830_010 Hb_002830_010 Hb_010515_020--Hb_002830_010 Hb_001679_050--Hb_002989_020 Hb_001679_050--Hb_011063_050 Hb_000340_530 Hb_000340_530 Hb_001679_050--Hb_000340_530 Hb_001679_050--Hb_004990_010 Hb_001679_050--Hb_000574_450 Hb_000856_040 Hb_000856_040 Hb_002071_070--Hb_000856_040 Hb_002042_050 Hb_002042_050 Hb_002071_070--Hb_002042_050 Hb_003058_260 Hb_003058_260 Hb_002071_070--Hb_003058_260 Hb_002890_130 Hb_002890_130 Hb_002071_070--Hb_002890_130 Hb_002071_070--Hb_002830_010 Hb_012632_010 Hb_012632_010 Hb_002071_070--Hb_012632_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.69398 14.8439 12.0417 19.0599 10.799 8.62059
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.41902 14.4091 13.2452 11.8668 14.3055

CAGE analysis