Hb_005245_100

Information

Type -
Description -
Location Contig5245: 99919-104285
Sequence    

Annotation

kegg
ID rcu:RCOM_1212020
description hypothetical protein
nr
ID XP_012084260.1
description PREDICTED: uncharacterized protein At4g08330, chloroplastic-like [Jatropha curcas]
swissprot
ID Q9STN5
description Uncharacterized protein At4g08330, chloroplastic OS=Arabidopsis thaliana GN=At4g08330 PE=1 SV=1
trembl
ID B9SF11
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1212020 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46937: 101809-103992
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005245_100 0.0 - - PREDICTED: uncharacterized protein At4g08330, chloroplastic-like [Jatropha curcas]
2 Hb_001717_010 0.0666496705 - - F-box and wd40 domain protein, putative [Ricinus communis]
3 Hb_003607_130 0.0761252715 - - serine/threonine protein kinase, putative [Ricinus communis]
4 Hb_000925_130 0.0881047741 transcription factor TF Family: TRAF PREDICTED: BTB/POZ domain-containing protein At3g05675-like isoform X2 [Jatropha curcas]
5 Hb_000088_170 0.0884177344 - - PREDICTED: ran-binding protein 10-like [Jatropha curcas]
6 Hb_000069_310 0.089448596 - - ubiquitin ligase [Cucumis melo subsp. melo]
7 Hb_062226_130 0.0895497508 - - PREDICTED: serine/threonine-protein phosphatase PP1 isozyme 4 [Jatropha curcas]
8 Hb_020178_040 0.0900037287 - - conserved hypothetical protein [Ricinus communis]
9 Hb_004787_050 0.0920655411 - - PREDICTED: RINT1-like protein MAG2 [Jatropha curcas]
10 Hb_003657_010 0.0924684409 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000349_260 0.0925995517 - - PREDICTED: transmembrane protein 64 [Jatropha curcas]
12 Hb_000008_440 0.0930426308 - - PREDICTED: probable E3 ubiquitin-protein ligase LOG2 [Jatropha curcas]
13 Hb_001473_160 0.0954980036 - - Vesicle-associated membrane protein, putative [Ricinus communis]
14 Hb_000951_130 0.0955871156 - - PREDICTED: transcription factor GTE2-like [Jatropha curcas]
15 Hb_000197_250 0.0958870439 - - Chaperone protein dnaJ, putative [Ricinus communis]
16 Hb_000856_040 0.0960214846 transcription factor TF Family: DDT PREDICTED: uncharacterized protein LOC105640470 [Jatropha curcas]
17 Hb_006573_040 0.096159909 - - DNA binding protein, putative [Ricinus communis]
18 Hb_000329_230 0.0971795119 - - PREDICTED: uncharacterized protein LOC105643152 [Jatropha curcas]
19 Hb_007317_010 0.0983377626 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000025_730 0.0984771216 - - PREDICTED: 60S ribosomal protein L2, mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_005245_100 Hb_005245_100 Hb_001717_010 Hb_001717_010 Hb_005245_100--Hb_001717_010 Hb_003607_130 Hb_003607_130 Hb_005245_100--Hb_003607_130 Hb_000925_130 Hb_000925_130 Hb_005245_100--Hb_000925_130 Hb_000088_170 Hb_000088_170 Hb_005245_100--Hb_000088_170 Hb_000069_310 Hb_000069_310 Hb_005245_100--Hb_000069_310 Hb_062226_130 Hb_062226_130 Hb_005245_100--Hb_062226_130 Hb_000029_060 Hb_000029_060 Hb_001717_010--Hb_000029_060 Hb_026048_110 Hb_026048_110 Hb_001717_010--Hb_026048_110 Hb_000329_230 Hb_000329_230 Hb_001717_010--Hb_000329_230 Hb_001717_010--Hb_003607_130 Hb_004916_010 Hb_004916_010 Hb_001717_010--Hb_004916_010 Hb_008279_040 Hb_008279_040 Hb_003607_130--Hb_008279_040 Hb_001259_050 Hb_001259_050 Hb_003607_130--Hb_001259_050 Hb_000173_470 Hb_000173_470 Hb_003607_130--Hb_000173_470 Hb_020178_040 Hb_020178_040 Hb_003607_130--Hb_020178_040 Hb_000288_030 Hb_000288_030 Hb_000925_130--Hb_000288_030 Hb_013358_040 Hb_013358_040 Hb_000925_130--Hb_013358_040 Hb_000928_070 Hb_000928_070 Hb_000925_130--Hb_000928_070 Hb_000349_260 Hb_000349_260 Hb_000925_130--Hb_000349_260 Hb_000345_310 Hb_000345_310 Hb_000925_130--Hb_000345_310 Hb_000375_350 Hb_000375_350 Hb_000925_130--Hb_000375_350 Hb_000088_170--Hb_000349_260 Hb_000637_110 Hb_000637_110 Hb_000088_170--Hb_000637_110 Hb_005137_040 Hb_005137_040 Hb_000088_170--Hb_005137_040 Hb_001473_160 Hb_001473_160 Hb_000088_170--Hb_001473_160 Hb_000856_040 Hb_000856_040 Hb_000088_170--Hb_000856_040 Hb_001408_140 Hb_001408_140 Hb_000088_170--Hb_001408_140 Hb_000069_310--Hb_013358_040 Hb_003849_110 Hb_003849_110 Hb_000069_310--Hb_003849_110 Hb_000915_180 Hb_000915_180 Hb_000069_310--Hb_000915_180 Hb_002818_030 Hb_002818_030 Hb_000069_310--Hb_002818_030 Hb_000069_310--Hb_001473_160 Hb_000331_680 Hb_000331_680 Hb_000069_310--Hb_000331_680 Hb_000738_020 Hb_000738_020 Hb_062226_130--Hb_000738_020 Hb_005162_090 Hb_005162_090 Hb_062226_130--Hb_005162_090 Hb_000365_230 Hb_000365_230 Hb_062226_130--Hb_000365_230 Hb_164010_040 Hb_164010_040 Hb_062226_130--Hb_164010_040 Hb_062226_130--Hb_003849_110 Hb_003428_010 Hb_003428_010 Hb_062226_130--Hb_003428_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.05431 5.99062 5.42573 6.6525 2.92157 2.50333
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.90139 4.56572 7.15837 3.5154 4.26479

CAGE analysis