Hb_000856_040

Information

Type transcription factor
Description TF Family: DDT
Location Contig856: 25095-34997
Sequence    

Annotation

kegg
ID rcu:RCOM_1513140
description tRNA ligase, putative
nr
ID XP_012080176.1
description PREDICTED: uncharacterized protein LOC105640470 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067K842
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11559 PE=4 SV=1
Gene Ontology
ID GO:0016874
description ddt domain-containing protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60565: 24448-25123 , PASA_asmbl_60566: 29611-34179
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000856_040 0.0 transcription factor TF Family: DDT PREDICTED: uncharacterized protein LOC105640470 [Jatropha curcas]
2 Hb_002071_070 0.0580925469 transcription factor TF Family: RB conserved hypothetical protein [Ricinus communis]
3 Hb_001300_010 0.0644073898 transcription factor TF Family: C3H nucleic acid binding protein, putative [Ricinus communis]
4 Hb_003058_260 0.0645118584 - - hypothetical protein POPTR_0003s13040g [Populus trichocarpa]
5 Hb_012632_010 0.0649450879 - - PREDICTED: uncharacterized protein LOC105640019 [Jatropha curcas]
6 Hb_105105_010 0.0649727169 - - PREDICTED: coiled-coil domain-containing protein 132 [Jatropha curcas]
7 Hb_004994_240 0.0651569973 - - hypothetical protein PRUPE_ppa004633mg [Prunus persica]
8 Hb_002205_250 0.0667694497 - - PREDICTED: probable inactive serine/threonine-protein kinase scy1 isoform X1 [Jatropha curcas]
9 Hb_000088_170 0.0669419197 - - PREDICTED: ran-binding protein 10-like [Jatropha curcas]
10 Hb_001716_020 0.0690319005 - - hydrolase, putative [Ricinus communis]
11 Hb_012506_030 0.069071239 - - AP-2 complex subunit alpha, putative [Ricinus communis]
12 Hb_002326_040 0.0693621999 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein Os01g0723500-like [Jatropha curcas]
13 Hb_001481_060 0.0708674379 - - PREDICTED: E3 ubiquitin-protein ligase HOS1 isoform X1 [Jatropha curcas]
14 Hb_001257_030 0.0711076145 - - PREDICTED: serine/threonine-protein kinase Nek5 [Jatropha curcas]
15 Hb_005137_040 0.07129849 - - hypothetical protein JCGZ_12324 [Jatropha curcas]
16 Hb_002492_010 0.0725510255 - - PREDICTED: inositol-tetrakisphosphate 1-kinase 2-like [Populus euphratica]
17 Hb_001817_170 0.0734783623 - - PREDICTED: AP-1 complex subunit gamma-2-like [Jatropha curcas]
18 Hb_002830_010 0.0738792333 - - PREDICTED: TBCC domain-containing protein 1 [Jatropha curcas]
19 Hb_001195_530 0.0747125247 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000510_360 0.0749156069 transcription factor TF Family: GNAT PREDICTED: histone acetyltransferase GCN5 [Jatropha curcas]

Gene co-expression network

sample Hb_000856_040 Hb_000856_040 Hb_002071_070 Hb_002071_070 Hb_000856_040--Hb_002071_070 Hb_001300_010 Hb_001300_010 Hb_000856_040--Hb_001300_010 Hb_003058_260 Hb_003058_260 Hb_000856_040--Hb_003058_260 Hb_012632_010 Hb_012632_010 Hb_000856_040--Hb_012632_010 Hb_105105_010 Hb_105105_010 Hb_000856_040--Hb_105105_010 Hb_004994_240 Hb_004994_240 Hb_000856_040--Hb_004994_240 Hb_002042_050 Hb_002042_050 Hb_002071_070--Hb_002042_050 Hb_002071_070--Hb_003058_260 Hb_002890_130 Hb_002890_130 Hb_002071_070--Hb_002890_130 Hb_002830_010 Hb_002830_010 Hb_002071_070--Hb_002830_010 Hb_002071_070--Hb_012632_010 Hb_001300_010--Hb_004994_240 Hb_003398_080 Hb_003398_080 Hb_001300_010--Hb_003398_080 Hb_002492_010 Hb_002492_010 Hb_001300_010--Hb_002492_010 Hb_000120_910 Hb_000120_910 Hb_001300_010--Hb_000120_910 Hb_002232_480 Hb_002232_480 Hb_001300_010--Hb_002232_480 Hb_003058_260--Hb_012632_010 Hb_004787_050 Hb_004787_050 Hb_003058_260--Hb_004787_050 Hb_000313_120 Hb_000313_120 Hb_003058_260--Hb_000313_120 Hb_001998_240 Hb_001998_240 Hb_003058_260--Hb_001998_240 Hb_012632_010--Hb_002890_130 Hb_012632_010--Hb_002830_010 Hb_004374_110 Hb_004374_110 Hb_012632_010--Hb_004374_110 Hb_002205_250 Hb_002205_250 Hb_105105_010--Hb_002205_250 Hb_001408_140 Hb_001408_140 Hb_105105_010--Hb_001408_140 Hb_001195_530 Hb_001195_530 Hb_105105_010--Hb_001195_530 Hb_001716_020 Hb_001716_020 Hb_105105_010--Hb_001716_020 Hb_003835_070 Hb_003835_070 Hb_105105_010--Hb_003835_070 Hb_105105_010--Hb_002492_010 Hb_004994_240--Hb_002232_480 Hb_004994_240--Hb_002492_010 Hb_012239_020 Hb_012239_020 Hb_004994_240--Hb_012239_020 Hb_004994_240--Hb_003398_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.90665 8.50912 7.66783 8.29455 6.10977 4.6814
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.46162 4.29351 7.17143 6.16301 6.73472

CAGE analysis