Hb_000313_120

Information

Type -
Description -
Location Contig313: 176429-185282
Sequence    

Annotation

kegg
ID pop:POPTR_0008s12580g
description POPTRDRAFT_820653; hydroxyproline-rich glycoprotein
nr
ID XP_012075686.1
description PREDICTED: ALG-2 interacting protein X [Jatropha curcas]
swissprot
ID Q8T7K0
description ALG-2 interacting protein X OS=Dictyostelium discoideum GN=alxA PE=1 SV=1
trembl
ID A0A067KFH2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09274 PE=4 SV=1
Gene Ontology
ID GO:0005829
description alg-2 interacting protein x

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33136: 176431-185132
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000313_120 0.0 - - PREDICTED: ALG-2 interacting protein X [Jatropha curcas]
2 Hb_000789_250 0.0607560363 - - PREDICTED: uncharacterized protein LOC105637809 [Jatropha curcas]
3 Hb_003058_260 0.0661953598 - - hypothetical protein POPTR_0003s13040g [Populus trichocarpa]
4 Hb_001628_070 0.0676662185 - - hect ubiquitin-protein ligase, putative [Ricinus communis]
5 Hb_000215_140 0.0687405673 - - PREDICTED: phosphoinositide 3-kinase regulatory subunit 4-like [Malus domestica]
6 Hb_000317_370 0.0707778243 transcription factor TF Family: PHD PREDICTED: PHD finger protein At1g33420-like [Jatropha curcas]
7 Hb_000412_010 0.0717482062 - - hect ubiquitin-protein ligase, putative [Ricinus communis]
8 Hb_012490_090 0.072231805 - - PREDICTED: myosin-17 [Jatropha curcas]
9 Hb_002205_250 0.0725408381 - - PREDICTED: probable inactive serine/threonine-protein kinase scy1 isoform X1 [Jatropha curcas]
10 Hb_000537_050 0.0727091686 - - AP-2 complex subunit beta-1, putative [Ricinus communis]
11 Hb_002890_130 0.073253767 - - tip120, putative [Ricinus communis]
12 Hb_001217_050 0.0735344755 - - actin binding protein, putative [Ricinus communis]
13 Hb_000473_110 0.0739478578 - - PREDICTED: PP2A regulatory subunit TAP46 [Jatropha curcas]
14 Hb_002217_170 0.0741096049 - - PREDICTED: E3 ubiquitin-protein ligase UPL6-like isoform X1 [Gossypium raimondii]
15 Hb_001221_080 0.0751059178 - - PREDICTED: conserved oligomeric Golgi complex subunit 2 isoform X2 [Jatropha curcas]
16 Hb_004030_080 0.0752895381 - - hypothetical protein JCGZ_25110 [Jatropha curcas]
17 Hb_012632_010 0.0756114387 - - PREDICTED: uncharacterized protein LOC105640019 [Jatropha curcas]
18 Hb_003835_070 0.075932761 - - PREDICTED: uncharacterized protein LOC105641698 isoform X2 [Jatropha curcas]
19 Hb_000174_270 0.0761781537 - - PREDICTED: type II inositol 1,4,5-trisphosphate 5-phosphatase FRA3 isoform X1 [Jatropha curcas]
20 Hb_001814_030 0.0762038157 - - PREDICTED: uncharacterized protein LOC105650634 [Jatropha curcas]

Gene co-expression network

sample Hb_000313_120 Hb_000313_120 Hb_000789_250 Hb_000789_250 Hb_000313_120--Hb_000789_250 Hb_003058_260 Hb_003058_260 Hb_000313_120--Hb_003058_260 Hb_001628_070 Hb_001628_070 Hb_000313_120--Hb_001628_070 Hb_000215_140 Hb_000215_140 Hb_000313_120--Hb_000215_140 Hb_000317_370 Hb_000317_370 Hb_000313_120--Hb_000317_370 Hb_000412_010 Hb_000412_010 Hb_000313_120--Hb_000412_010 Hb_020378_030 Hb_020378_030 Hb_000789_250--Hb_020378_030 Hb_012395_140 Hb_012395_140 Hb_000789_250--Hb_012395_140 Hb_000537_050 Hb_000537_050 Hb_000789_250--Hb_000537_050 Hb_001369_130 Hb_001369_130 Hb_000789_250--Hb_001369_130 Hb_004586_220 Hb_004586_220 Hb_000789_250--Hb_004586_220 Hb_012632_010 Hb_012632_010 Hb_003058_260--Hb_012632_010 Hb_002071_070 Hb_002071_070 Hb_003058_260--Hb_002071_070 Hb_004787_050 Hb_004787_050 Hb_003058_260--Hb_004787_050 Hb_000856_040 Hb_000856_040 Hb_003058_260--Hb_000856_040 Hb_001998_240 Hb_001998_240 Hb_003058_260--Hb_001998_240 Hb_004705_020 Hb_004705_020 Hb_001628_070--Hb_004705_020 Hb_006531_020 Hb_006531_020 Hb_001628_070--Hb_006531_020 Hb_004586_290 Hb_004586_290 Hb_001628_070--Hb_004586_290 Hb_000003_100 Hb_000003_100 Hb_001628_070--Hb_000003_100 Hb_000024_040 Hb_000024_040 Hb_001628_070--Hb_000024_040 Hb_001628_070--Hb_000412_010 Hb_012490_090 Hb_012490_090 Hb_000215_140--Hb_012490_090 Hb_000215_140--Hb_000412_010 Hb_000720_130 Hb_000720_130 Hb_000215_140--Hb_000720_130 Hb_000230_260 Hb_000230_260 Hb_000215_140--Hb_000230_260 Hb_001963_100 Hb_001963_100 Hb_000215_140--Hb_001963_100 Hb_002217_170 Hb_002217_170 Hb_000317_370--Hb_002217_170 Hb_011618_090 Hb_011618_090 Hb_000317_370--Hb_011618_090 Hb_000025_280 Hb_000025_280 Hb_000317_370--Hb_000025_280 Hb_003835_070 Hb_003835_070 Hb_000317_370--Hb_003835_070 Hb_000976_210 Hb_000976_210 Hb_000317_370--Hb_000976_210 Hb_000258_160 Hb_000258_160 Hb_000317_370--Hb_000258_160 Hb_003060_060 Hb_003060_060 Hb_000412_010--Hb_003060_060 Hb_000395_070 Hb_000395_070 Hb_000412_010--Hb_000395_070 Hb_159558_010 Hb_159558_010 Hb_000412_010--Hb_159558_010 Hb_001550_060 Hb_001550_060 Hb_000412_010--Hb_001550_060 Hb_000412_010--Hb_000230_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.9071 30.0532 17.6389 23.2724 24.9431 18.4606
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
15.4639 13.0406 27.1519 29.0526 24.381

CAGE analysis