Hb_001628_070

Information

Type -
Description -
Location Contig1628: 66166-78024
Sequence    

Annotation

kegg
ID rcu:RCOM_0490830
description hect ubiquitin-protein ligase, putative
nr
ID XP_002530820.1
description hect ubiquitin-protein ligase, putative [Ricinus communis]
swissprot
ID Q6WWW4
description E3 ubiquitin-protein ligase UPL3 OS=Arabidopsis thaliana GN=UPL3 PE=1 SV=1
trembl
ID B9SXV1
description Hect ubiquitin-protein ligase, putative OS=Ricinus communis GN=RCOM_0490830 PE=4 SV=1
Gene Ontology
ID GO:0004842
description e3 ubiquitin-protein ligase upl3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14771: 66036-77933 , PASA_asmbl_14772: 66793-67656
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001628_070 0.0 - - hect ubiquitin-protein ligase, putative [Ricinus communis]
2 Hb_004705_020 0.0540317504 - - PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 3 [Jatropha curcas]
3 Hb_006531_020 0.0567415481 - - PREDICTED: autophagy-related protein 13 [Jatropha curcas]
4 Hb_004586_290 0.061449933 - - PREDICTED: transport inhibitor response 1-like protein [Jatropha curcas]
5 Hb_000003_100 0.0626512968 transcription factor TF Family: SNF2 PREDICTED: transcription termination factor 2 isoform X5 [Jatropha curcas]
6 Hb_000024_040 0.0626816183 - - PREDICTED: ALG-2 interacting protein X [Jatropha curcas]
7 Hb_000412_010 0.0631805983 - - hect ubiquitin-protein ligase, putative [Ricinus communis]
8 Hb_000665_230 0.0660340619 - - PREDICTED: uncharacterized protein LOC105637615 [Jatropha curcas]
9 Hb_005542_140 0.0667138923 - - PREDICTED: U-box domain-containing protein 62-like [Jatropha curcas]
10 Hb_000313_120 0.0676662185 - - PREDICTED: ALG-2 interacting protein X [Jatropha curcas]
11 Hb_000025_280 0.0687877565 transcription factor TF Family: C3H hypothetical protein JCGZ_07432 [Jatropha curcas]
12 Hb_005656_040 0.0728426173 desease resistance Gene Name: T2SE ATP-dependent RNA helicase, putative [Ricinus communis]
13 Hb_000317_370 0.0729402374 transcription factor TF Family: PHD PREDICTED: PHD finger protein At1g33420-like [Jatropha curcas]
14 Hb_001951_170 0.0740653763 - - PREDICTED: uncharacterized protein LOC105649755 [Jatropha curcas]
15 Hb_023226_080 0.0744646589 transcription factor TF Family: C3H PREDICTED: 30-kDa cleavage and polyadenylation specificity factor 30 isoform X1 [Jatropha curcas]
16 Hb_159558_010 0.0746831547 - - PREDICTED: uncharacterized protein LOC105635846 [Jatropha curcas]
17 Hb_013358_010 0.0754847825 - - hypothetical protein JCGZ_07102 [Jatropha curcas]
18 Hb_003216_090 0.075646291 - - PREDICTED: nuclear pore complex protein NUP133 isoform X1 [Jatropha curcas]
19 Hb_000331_580 0.0761440166 - - PREDICTED: programmed cell death protein 4-like [Jatropha curcas]
20 Hb_000037_220 0.076497117 - - PREDICTED: vacuolar protein-sorting-associated protein 11 homolog [Jatropha curcas]

Gene co-expression network

sample Hb_001628_070 Hb_001628_070 Hb_004705_020 Hb_004705_020 Hb_001628_070--Hb_004705_020 Hb_006531_020 Hb_006531_020 Hb_001628_070--Hb_006531_020 Hb_004586_290 Hb_004586_290 Hb_001628_070--Hb_004586_290 Hb_000003_100 Hb_000003_100 Hb_001628_070--Hb_000003_100 Hb_000024_040 Hb_000024_040 Hb_001628_070--Hb_000024_040 Hb_000412_010 Hb_000412_010 Hb_001628_070--Hb_000412_010 Hb_004705_020--Hb_006531_020 Hb_000017_220 Hb_000017_220 Hb_004705_020--Hb_000017_220 Hb_004705_020--Hb_000024_040 Hb_000025_280 Hb_000025_280 Hb_004705_020--Hb_000025_280 Hb_005977_070 Hb_005977_070 Hb_004705_020--Hb_005977_070 Hb_001951_170 Hb_001951_170 Hb_006531_020--Hb_001951_170 Hb_000331_580 Hb_000331_580 Hb_006531_020--Hb_000331_580 Hb_000009_410 Hb_000009_410 Hb_006531_020--Hb_000009_410 Hb_123531_010 Hb_123531_010 Hb_006531_020--Hb_123531_010 Hb_005568_040 Hb_005568_040 Hb_004586_290--Hb_005568_040 Hb_003120_080 Hb_003120_080 Hb_004586_290--Hb_003120_080 Hb_005542_140 Hb_005542_140 Hb_004586_290--Hb_005542_140 Hb_000402_230 Hb_000402_230 Hb_004586_290--Hb_000402_230 Hb_004586_290--Hb_000025_280 Hb_003216_090 Hb_003216_090 Hb_000003_100--Hb_003216_090 Hb_000003_100--Hb_000331_580 Hb_002890_130 Hb_002890_130 Hb_000003_100--Hb_002890_130 Hb_005563_060 Hb_005563_060 Hb_000003_100--Hb_005563_060 Hb_012286_040 Hb_012286_040 Hb_000003_100--Hb_012286_040 Hb_000008_240 Hb_000008_240 Hb_000003_100--Hb_000008_240 Hb_000347_390 Hb_000347_390 Hb_000024_040--Hb_000347_390 Hb_000703_200 Hb_000703_200 Hb_000024_040--Hb_000703_200 Hb_000024_040--Hb_004586_290 Hb_000479_070 Hb_000479_070 Hb_000024_040--Hb_000479_070 Hb_003060_060 Hb_003060_060 Hb_000412_010--Hb_003060_060 Hb_000395_070 Hb_000395_070 Hb_000412_010--Hb_000395_070 Hb_159558_010 Hb_159558_010 Hb_000412_010--Hb_159558_010 Hb_001550_060 Hb_001550_060 Hb_000412_010--Hb_001550_060 Hb_000230_260 Hb_000230_260 Hb_000412_010--Hb_000230_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
21.7042 50.569 19.03 26.5177 27.7466 23.781
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
16.8118 15.4843 27.5183 40.5495 34.1009

CAGE analysis