Hb_000009_410

Information

Type transcription factor
Description TF Family: SET
Location Contig9: 401739-429421
Sequence    

Annotation

kegg
ID pop:POPTR_0007s12130g
description hypothetical protein
nr
ID XP_006380742.1
description hypothetical protein POPTR_0007s12130g [Populus trichocarpa]
swissprot
ID O64827
description Histone-lysine N-methyltransferase SUVR5 OS=Arabidopsis thaliana GN=SUVR5 PE=1 SV=3
trembl
ID U5G8G8
description Histone-lysine N-methyltransferase OS=Populus trichocarpa GN=POPTR_0007s12130g PE=4 SV=1
Gene Ontology
ID GO:0005634
description histone-lysine n-methyltransferase suvr5-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61887: 401776-404098 , PASA_asmbl_61888: 406460-407298 , PASA_asmbl_61889: 407372-411655 , PASA_asmbl_61890: 408558-408735 , PASA_asmbl_61891: 411801-415297 , PASA_asmbl_61892: 414507-414755
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000009_410 0.0 transcription factor TF Family: SET hypothetical protein POPTR_0007s12130g [Populus trichocarpa]
2 Hb_005408_030 0.0555345116 - - PREDICTED: uncharacterized protein LOC105648043 [Jatropha curcas]
3 Hb_006531_020 0.0579371892 - - PREDICTED: autophagy-related protein 13 [Jatropha curcas]
4 Hb_000934_210 0.0683640872 - - suppressor of ty, putative [Ricinus communis]
5 Hb_001951_170 0.069705457 - - PREDICTED: uncharacterized protein LOC105649755 [Jatropha curcas]
6 Hb_011021_050 0.0710450394 - - PREDICTED: uncharacterized protein LOC105644387 isoform X1 [Jatropha curcas]
7 Hb_006031_010 0.0721756676 - - PREDICTED: transcription initiation factor TFIID subunit 15b isoform X3 [Jatropha curcas]
8 Hb_000003_410 0.0724476984 - - PREDICTED: intron-binding protein aquarius [Jatropha curcas]
9 Hb_000958_050 0.0747676541 - - hypothetical protein JCGZ_16781 [Jatropha curcas]
10 Hb_009486_090 0.0776023263 - - RNA binding protein, putative [Ricinus communis]
11 Hb_005186_040 0.0779196267 - - PREDICTED: mediator of RNA polymerase II transcription subunit 13 isoform X2 [Jatropha curcas]
12 Hb_021596_010 0.0785014391 - - PREDICTED: uncharacterized protein LOC105647118 [Jatropha curcas]
13 Hb_003216_090 0.0793863837 - - PREDICTED: nuclear pore complex protein NUP133 isoform X1 [Jatropha curcas]
14 Hb_006478_030 0.0807855861 - - hypothetical protein POPTR_0005s23510g [Populus trichocarpa]
15 Hb_002357_070 0.0818904002 transcription factor TF Family: PHD PREDICTED: protein strawberry notch homolog 1 [Jatropha curcas]
16 Hb_002609_080 0.0822263518 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH 7, chloroplastic-like [Jatropha curcas]
17 Hb_002631_210 0.0822788856 - - PREDICTED: uncharacterized protein LOC105646172 [Jatropha curcas]
18 Hb_004705_020 0.0834875203 - - PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 3 [Jatropha curcas]
19 Hb_012244_020 0.0844667521 - - calpain, putative [Ricinus communis]
20 Hb_000024_040 0.0847331436 - - PREDICTED: ALG-2 interacting protein X [Jatropha curcas]

Gene co-expression network

sample Hb_000009_410 Hb_000009_410 Hb_005408_030 Hb_005408_030 Hb_000009_410--Hb_005408_030 Hb_006531_020 Hb_006531_020 Hb_000009_410--Hb_006531_020 Hb_000934_210 Hb_000934_210 Hb_000009_410--Hb_000934_210 Hb_001951_170 Hb_001951_170 Hb_000009_410--Hb_001951_170 Hb_011021_050 Hb_011021_050 Hb_000009_410--Hb_011021_050 Hb_006031_010 Hb_006031_010 Hb_000009_410--Hb_006031_010 Hb_001648_020 Hb_001648_020 Hb_005408_030--Hb_001648_020 Hb_005408_030--Hb_001951_170 Hb_005186_040 Hb_005186_040 Hb_005408_030--Hb_005186_040 Hb_005408_030--Hb_011021_050 Hb_005408_030--Hb_000934_210 Hb_001628_070 Hb_001628_070 Hb_006531_020--Hb_001628_070 Hb_006531_020--Hb_001951_170 Hb_000331_580 Hb_000331_580 Hb_006531_020--Hb_000331_580 Hb_004705_020 Hb_004705_020 Hb_006531_020--Hb_004705_020 Hb_123531_010 Hb_123531_010 Hb_006531_020--Hb_123531_010 Hb_027472_220 Hb_027472_220 Hb_000934_210--Hb_027472_220 Hb_012244_020 Hb_012244_020 Hb_000934_210--Hb_012244_020 Hb_000934_210--Hb_123531_010 Hb_002007_110 Hb_002007_110 Hb_000934_210--Hb_002007_110 Hb_002357_070 Hb_002357_070 Hb_000934_210--Hb_002357_070 Hb_000958_050 Hb_000958_050 Hb_000934_210--Hb_000958_050 Hb_003216_090 Hb_003216_090 Hb_001951_170--Hb_003216_090 Hb_005832_010 Hb_005832_010 Hb_001951_170--Hb_005832_010 Hb_001951_170--Hb_006031_010 Hb_001951_170--Hb_002007_110 Hb_001951_170--Hb_000331_580 Hb_004306_120 Hb_004306_120 Hb_011021_050--Hb_004306_120 Hb_002609_080 Hb_002609_080 Hb_011021_050--Hb_002609_080 Hb_000656_060 Hb_000656_060 Hb_011021_050--Hb_000656_060 Hb_011021_050--Hb_005186_040 Hb_009486_090 Hb_009486_090 Hb_006031_010--Hb_009486_090 Hb_006031_010--Hb_002007_110 Hb_006031_010--Hb_012244_020 Hb_001377_100 Hb_001377_100 Hb_006031_010--Hb_001377_100 Hb_006031_010--Hb_123531_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.82621 5.75194 2.84177 2.3845 2.0342 2.16386
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.69322 1.37013 2.50522 4.49096 4.72571

CAGE analysis