Hb_005408_030

Information

Type -
Description -
Location Contig5408: 28541-39002
Sequence    

Annotation

kegg
ID tcc:TCM_019727
description NT domain of poly(A) polymerase and terminal uridylyl transferase-containing protein, putative
nr
ID XP_012089694.1
description PREDICTED: uncharacterized protein LOC105648043 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JFV6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00363 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47858: 36910-39110
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005408_030 0.0 - - PREDICTED: uncharacterized protein LOC105648043 [Jatropha curcas]
2 Hb_000009_410 0.0555345116 transcription factor TF Family: SET hypothetical protein POPTR_0007s12130g [Populus trichocarpa]
3 Hb_001648_020 0.0577415251 - - hypothetical protein POPTR_0007s07750g [Populus trichocarpa]
4 Hb_001951_170 0.0610621851 - - PREDICTED: uncharacterized protein LOC105649755 [Jatropha curcas]
5 Hb_005186_040 0.0613059559 - - PREDICTED: mediator of RNA polymerase II transcription subunit 13 isoform X2 [Jatropha curcas]
6 Hb_011021_050 0.0638497963 - - PREDICTED: uncharacterized protein LOC105644387 isoform X1 [Jatropha curcas]
7 Hb_000934_210 0.0674932241 - - suppressor of ty, putative [Ricinus communis]
8 Hb_004204_010 0.0701254669 - - PREDICTED: uncharacterized protein LOC105640608 [Jatropha curcas]
9 Hb_006531_020 0.0702760867 - - PREDICTED: autophagy-related protein 13 [Jatropha curcas]
10 Hb_001488_180 0.0703289172 - - PREDICTED: uncharacterized protein LOC105644152 isoform X1 [Jatropha curcas]
11 Hb_005977_070 0.0733194339 - - PREDICTED: probable helicase MAGATAMA 3 isoform X1 [Jatropha curcas]
12 Hb_000958_050 0.0738612711 - - hypothetical protein JCGZ_16781 [Jatropha curcas]
13 Hb_012244_020 0.073913352 - - calpain, putative [Ricinus communis]
14 Hb_033312_130 0.074352305 - - PREDICTED: protein TIC 40, chloroplastic [Jatropha curcas]
15 Hb_002631_210 0.0754403004 - - PREDICTED: uncharacterized protein LOC105646172 [Jatropha curcas]
16 Hb_021596_010 0.0758866754 - - PREDICTED: uncharacterized protein LOC105647118 [Jatropha curcas]
17 Hb_002805_210 0.0760041577 transcription factor TF Family: SNF2 Chromodomain-helicase-DNA-binding 2 [Gossypium arboreum]
18 Hb_003939_060 0.0777276357 - - conserved hypothetical protein [Ricinus communis]
19 Hb_001377_100 0.0780791662 - - PREDICTED: uncharacterized protein LOC105642863 isoform X1 [Jatropha curcas]
20 Hb_011174_020 0.0787110932 - - PREDICTED: uncharacterized protein LOC105632610 [Jatropha curcas]

Gene co-expression network

sample Hb_005408_030 Hb_005408_030 Hb_000009_410 Hb_000009_410 Hb_005408_030--Hb_000009_410 Hb_001648_020 Hb_001648_020 Hb_005408_030--Hb_001648_020 Hb_001951_170 Hb_001951_170 Hb_005408_030--Hb_001951_170 Hb_005186_040 Hb_005186_040 Hb_005408_030--Hb_005186_040 Hb_011021_050 Hb_011021_050 Hb_005408_030--Hb_011021_050 Hb_000934_210 Hb_000934_210 Hb_005408_030--Hb_000934_210 Hb_006531_020 Hb_006531_020 Hb_000009_410--Hb_006531_020 Hb_000009_410--Hb_000934_210 Hb_000009_410--Hb_001951_170 Hb_000009_410--Hb_011021_050 Hb_006031_010 Hb_006031_010 Hb_000009_410--Hb_006031_010 Hb_001648_020--Hb_005186_040 Hb_012244_020 Hb_012244_020 Hb_001648_020--Hb_012244_020 Hb_011174_020 Hb_011174_020 Hb_001648_020--Hb_011174_020 Hb_001648_020--Hb_000934_210 Hb_001563_010 Hb_001563_010 Hb_001648_020--Hb_001563_010 Hb_003216_090 Hb_003216_090 Hb_001951_170--Hb_003216_090 Hb_005832_010 Hb_005832_010 Hb_001951_170--Hb_005832_010 Hb_001951_170--Hb_006031_010 Hb_001951_170--Hb_006531_020 Hb_002007_110 Hb_002007_110 Hb_001951_170--Hb_002007_110 Hb_000331_580 Hb_000331_580 Hb_001951_170--Hb_000331_580 Hb_005186_040--Hb_012244_020 Hb_002521_020 Hb_002521_020 Hb_005186_040--Hb_002521_020 Hb_007441_160 Hb_007441_160 Hb_005186_040--Hb_007441_160 Hb_000672_040 Hb_000672_040 Hb_005186_040--Hb_000672_040 Hb_001377_100 Hb_001377_100 Hb_005186_040--Hb_001377_100 Hb_004306_120 Hb_004306_120 Hb_011021_050--Hb_004306_120 Hb_002609_080 Hb_002609_080 Hb_011021_050--Hb_002609_080 Hb_000656_060 Hb_000656_060 Hb_011021_050--Hb_000656_060 Hb_011021_050--Hb_005186_040 Hb_027472_220 Hb_027472_220 Hb_000934_210--Hb_027472_220 Hb_000934_210--Hb_012244_020 Hb_123531_010 Hb_123531_010 Hb_000934_210--Hb_123531_010 Hb_000934_210--Hb_002007_110 Hb_002357_070 Hb_002357_070 Hb_000934_210--Hb_002357_070 Hb_000958_050 Hb_000958_050 Hb_000934_210--Hb_000958_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.79812 11.6823 5.34338 5.59457 4.21396 4.63119
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.73209 4.20171 4.7632 7.88912 9.81046

CAGE analysis