Hb_002521_020

Information

Type -
Description -
Location Contig2521: 49875-54215
Sequence    

Annotation

kegg
ID rcu:RCOM_0646480
description pentatricopeptide repeat-containing protein, putative
nr
ID XP_012084287.1
description PREDICTED: pentatricopeptide repeat-containing protein At1g03100, mitochondrial-like isoform X2 [Jatropha curcas]
swissprot
ID Q9SA60
description Pentatricopeptide repeat-containing protein At1g03100, mitochondrial OS=Arabidopsis thaliana GN=At1g03100 PE=2 SV=1
trembl
ID A0A067JYA8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19777 PE=4 SV=1
Gene Ontology
ID GO:0005515
description pentatricopeptide repeat-containing protein mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26385: 49484-49975 , PASA_asmbl_26388: 52253-52493 , PASA_asmbl_26390: 53659-54914
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002521_020 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At1g03100, mitochondrial-like isoform X2 [Jatropha curcas]
2 Hb_010180_060 0.0510082926 - - PREDICTED: uncharacterized protein LOC105648049 [Jatropha curcas]
3 Hb_005186_040 0.0579039963 - - PREDICTED: mediator of RNA polymerase II transcription subunit 13 isoform X2 [Jatropha curcas]
4 Hb_001133_030 0.0603663489 - - PREDICTED: MAG2-interacting protein 2-like [Jatropha curcas]
5 Hb_001124_050 0.0612642674 transcription factor TF Family: SNF2 PREDICTED: chromatin structure-remodeling complex protein SYD-like [Jatropha curcas]
6 Hb_009486_170 0.0633180019 - - PREDICTED: eukaryotic translation initiation factor 4G [Jatropha curcas]
7 Hb_001377_100 0.0644840463 - - PREDICTED: uncharacterized protein LOC105642863 isoform X1 [Jatropha curcas]
8 Hb_008053_040 0.0659313935 - - PREDICTED: mediator of RNA polymerase II transcription subunit 12-like [Pyrus x bretschneideri]
9 Hb_012244_020 0.0688509824 - - calpain, putative [Ricinus communis]
10 Hb_003805_040 0.068965443 - - Sacsin [Glycine soja]
11 Hb_000665_230 0.0707688066 - - PREDICTED: uncharacterized protein LOC105637615 [Jatropha curcas]
12 Hb_002909_120 0.0737281475 - - PREDICTED: transcription elongation factor SPT6 [Jatropha curcas]
13 Hb_005488_170 0.0785747303 - - PREDICTED: septin and tuftelin-interacting protein 1 homolog 1 [Jatropha curcas]
14 Hb_001648_020 0.0794029363 - - hypothetical protein POPTR_0007s07750g [Populus trichocarpa]
15 Hb_006031_010 0.0795789488 - - PREDICTED: transcription initiation factor TFIID subunit 15b isoform X3 [Jatropha curcas]
16 Hb_000925_090 0.0808491102 - - PREDICTED: uncharacterized protein LOC105635805 isoform X1 [Jatropha curcas]
17 Hb_000363_300 0.0808702571 - - PREDICTED: protein ENHANCED DOWNY MILDEW 2 isoform X1 [Jatropha curcas]
18 Hb_000059_230 0.0808893377 - - PREDICTED: uncharacterized protein LOC105648049 [Jatropha curcas]
19 Hb_001951_170 0.0810711017 - - PREDICTED: uncharacterized protein LOC105649755 [Jatropha curcas]
20 Hb_000574_530 0.0811145835 - - PREDICTED: pre-mRNA-processing-splicing factor 8 [Jatropha curcas]

Gene co-expression network

sample Hb_002521_020 Hb_002521_020 Hb_010180_060 Hb_010180_060 Hb_002521_020--Hb_010180_060 Hb_005186_040 Hb_005186_040 Hb_002521_020--Hb_005186_040 Hb_001133_030 Hb_001133_030 Hb_002521_020--Hb_001133_030 Hb_001124_050 Hb_001124_050 Hb_002521_020--Hb_001124_050 Hb_009486_170 Hb_009486_170 Hb_002521_020--Hb_009486_170 Hb_001377_100 Hb_001377_100 Hb_002521_020--Hb_001377_100 Hb_008053_040 Hb_008053_040 Hb_010180_060--Hb_008053_040 Hb_006839_010 Hb_006839_010 Hb_010180_060--Hb_006839_010 Hb_005488_170 Hb_005488_170 Hb_010180_060--Hb_005488_170 Hb_000059_230 Hb_000059_230 Hb_010180_060--Hb_000059_230 Hb_003805_040 Hb_003805_040 Hb_010180_060--Hb_003805_040 Hb_012244_020 Hb_012244_020 Hb_005186_040--Hb_012244_020 Hb_001648_020 Hb_001648_020 Hb_005186_040--Hb_001648_020 Hb_007441_160 Hb_007441_160 Hb_005186_040--Hb_007441_160 Hb_000672_040 Hb_000672_040 Hb_005186_040--Hb_000672_040 Hb_005186_040--Hb_001377_100 Hb_000925_090 Hb_000925_090 Hb_001133_030--Hb_000925_090 Hb_001133_030--Hb_009486_170 Hb_001133_030--Hb_012244_020 Hb_011689_030 Hb_011689_030 Hb_001133_030--Hb_011689_030 Hb_000003_410 Hb_000003_410 Hb_001133_030--Hb_000003_410 Hb_001124_050--Hb_009486_170 Hb_009486_090 Hb_009486_090 Hb_001124_050--Hb_009486_090 Hb_006031_010 Hb_006031_010 Hb_001124_050--Hb_006031_010 Hb_001124_050--Hb_001133_030 Hb_001951_170 Hb_001951_170 Hb_001124_050--Hb_001951_170 Hb_002333_050 Hb_002333_050 Hb_009486_170--Hb_002333_050 Hb_009486_170--Hb_003805_040 Hb_000665_230 Hb_000665_230 Hb_009486_170--Hb_000665_230 Hb_007576_210 Hb_007576_210 Hb_009486_170--Hb_007576_210 Hb_000086_690 Hb_000086_690 Hb_009486_170--Hb_000086_690 Hb_001377_100--Hb_009486_090 Hb_001377_100--Hb_006031_010 Hb_135572_010 Hb_135572_010 Hb_001377_100--Hb_135572_010 Hb_001377_100--Hb_012244_020 Hb_001377_100--Hb_000059_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.29469 4.37411 1.40108 2.32117 2.10483 2.30467
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.08708 0.891089 1.95333 2.75266 4.38241

CAGE analysis