Hb_005488_170

Information

Type -
Description -
Location Contig5488: 126504-129101
Sequence    

Annotation

kegg
ID pop:POPTR_0013s07330g
description POPTRDRAFT_807023; D111/G-patch domain-containing family protein
nr
ID XP_012070277.1
description PREDICTED: septin and tuftelin-interacting protein 1 homolog 1 [Jatropha curcas]
swissprot
ID Q9SHG6
description Septin and tuftelin-interacting protein 1 homolog 1 OS=Arabidopsis thaliana GN=STIPL1 PE=2 SV=1
trembl
ID A0A067L644
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02584 PE=3 SV=1
Gene Ontology
ID GO:0005681
description septin and tuftelin-interacting protein 1 homolog 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 048_K21.ab1: 126294-127036

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005488_170 0.0 - - PREDICTED: septin and tuftelin-interacting protein 1 homolog 1 [Jatropha curcas]
2 Hb_002600_060 0.0687262627 - - PREDICTED: putative nuclear matrix constituent protein 1-like protein [Jatropha curcas]
3 Hb_005701_130 0.0690939824 transcription factor TF Family: SWI/SNF-SWI3 PREDICTED: lysine-specific histone demethylase 1 homolog 3 [Jatropha curcas]
4 Hb_002909_120 0.0701659295 - - PREDICTED: transcription elongation factor SPT6 [Jatropha curcas]
5 Hb_010998_020 0.0705312042 - - ubiquitin ligase E3 alpha, putative [Ricinus communis]
6 Hb_012053_090 0.071177047 transcription factor TF Family: DDT PREDICTED: uncharacterized protein LOC105637346 [Jatropha curcas]
7 Hb_005348_010 0.0716559035 - - conserved hypothetical protein [Ricinus communis]
8 Hb_001726_050 0.0759422517 transcription factor TF Family: C3H Nucleic acid binding,zinc ion binding,DNA binding, putative isoform 1 [Theobroma cacao]
9 Hb_005186_040 0.0763301808 - - PREDICTED: mediator of RNA polymerase II transcription subunit 13 isoform X2 [Jatropha curcas]
10 Hb_000046_190 0.0766388119 - - PREDICTED: uncharacterized protein LOC105647118 [Jatropha curcas]
11 Hb_000714_040 0.0767069056 - - PREDICTED: uncharacterized protein LOC105634664 isoform X2 [Jatropha curcas]
12 Hb_012244_020 0.0778849263 - - calpain, putative [Ricinus communis]
13 Hb_002521_020 0.0785747303 - - PREDICTED: pentatricopeptide repeat-containing protein At1g03100, mitochondrial-like isoform X2 [Jatropha curcas]
14 Hb_000925_090 0.0813280884 - - PREDICTED: uncharacterized protein LOC105635805 isoform X1 [Jatropha curcas]
15 Hb_000329_750 0.0818335389 - - PREDICTED: uncharacterized protein LOC105643205 [Jatropha curcas]
16 Hb_001133_030 0.0830194608 - - PREDICTED: MAG2-interacting protein 2-like [Jatropha curcas]
17 Hb_000672_040 0.0833741357 - - PREDICTED: ENHANCER OF AG-4 protein 2 [Jatropha curcas]
18 Hb_010180_060 0.0834693352 - - PREDICTED: uncharacterized protein LOC105648049 [Jatropha curcas]
19 Hb_006839_010 0.0860882073 - - PREDICTED: importin subunit beta-1-like [Jatropha curcas]
20 Hb_001377_100 0.0864152537 - - PREDICTED: uncharacterized protein LOC105642863 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_005488_170 Hb_005488_170 Hb_002600_060 Hb_002600_060 Hb_005488_170--Hb_002600_060 Hb_005701_130 Hb_005701_130 Hb_005488_170--Hb_005701_130 Hb_002909_120 Hb_002909_120 Hb_005488_170--Hb_002909_120 Hb_010998_020 Hb_010998_020 Hb_005488_170--Hb_010998_020 Hb_012053_090 Hb_012053_090 Hb_005488_170--Hb_012053_090 Hb_005348_010 Hb_005348_010 Hb_005488_170--Hb_005348_010 Hb_000331_560 Hb_000331_560 Hb_002600_060--Hb_000331_560 Hb_000925_090 Hb_000925_090 Hb_002600_060--Hb_000925_090 Hb_005211_020 Hb_005211_020 Hb_002600_060--Hb_005211_020 Hb_001133_030 Hb_001133_030 Hb_002600_060--Hb_001133_030 Hb_000083_070 Hb_000083_070 Hb_002600_060--Hb_000083_070 Hb_005701_130--Hb_012053_090 Hb_000538_280 Hb_000538_280 Hb_005701_130--Hb_000538_280 Hb_001377_100 Hb_001377_100 Hb_005701_130--Hb_001377_100 Hb_001648_020 Hb_001648_020 Hb_005701_130--Hb_001648_020 Hb_005701_130--Hb_002600_060 Hb_002333_050 Hb_002333_050 Hb_002909_120--Hb_002333_050 Hb_000046_190 Hb_000046_190 Hb_002909_120--Hb_000046_190 Hb_003119_080 Hb_003119_080 Hb_002909_120--Hb_003119_080 Hb_009486_170 Hb_009486_170 Hb_002909_120--Hb_009486_170 Hb_188063_010 Hb_188063_010 Hb_002909_120--Hb_188063_010 Hb_002909_120--Hb_001133_030 Hb_010998_020--Hb_012053_090 Hb_001726_050 Hb_001726_050 Hb_010998_020--Hb_001726_050 Hb_010998_020--Hb_005701_130 Hb_000714_040 Hb_000714_040 Hb_010998_020--Hb_000714_040 Hb_002631_250 Hb_002631_250 Hb_010998_020--Hb_002631_250 Hb_002328_040 Hb_002328_040 Hb_012053_090--Hb_002328_040 Hb_012053_090--Hb_002600_060 Hb_003607_070 Hb_003607_070 Hb_012053_090--Hb_003607_070 Hb_000059_230 Hb_000059_230 Hb_012053_090--Hb_000059_230 Hb_000329_750 Hb_000329_750 Hb_005348_010--Hb_000329_750 Hb_003805_050 Hb_003805_050 Hb_005348_010--Hb_003805_050 Hb_006295_020 Hb_006295_020 Hb_005348_010--Hb_006295_020 Hb_003203_030 Hb_003203_030 Hb_005348_010--Hb_003203_030 Hb_005348_010--Hb_002909_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.21225 11.5473 5.01047 6.03037 8.88445 6.98724
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.03344 3.84068 7.63281 8.46013 17.7885

CAGE analysis