Hb_003607_070

Information

Type -
Description -
Location Contig3607: 90103-92058
Sequence    

Annotation

kegg
ID pop:POPTR_0014s18910g
description POPTRDRAFT_573349; pentatricopeptide repeat-containing family protein
nr
ID XP_012085162.1
description PREDICTED: pentatricopeptide repeat-containing protein At5g48910 [Jatropha curcas]
swissprot
ID Q9FI80
description Pentatricopeptide repeat-containing protein At5g48910 OS=Arabidopsis thaliana GN=PCMP-H38 PE=2 SV=1
trembl
ID A0A067K2C4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17578 PE=4 SV=1
Gene Ontology
ID GO:0009507
description pentatricopeptide repeat-containing protein at5g48910

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37161: 90257-90863 , PASA_asmbl_37162: 91406-91886
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003607_070 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At5g48910 [Jatropha curcas]
2 Hb_002235_200 0.0720479713 - - pattern formation protein, putative [Ricinus communis]
3 Hb_001498_010 0.0834328078 - - PREDICTED: uncharacterized protein LOC105648994 [Jatropha curcas]
4 Hb_012053_090 0.0836447876 transcription factor TF Family: DDT PREDICTED: uncharacterized protein LOC105637346 [Jatropha curcas]
5 Hb_004374_110 0.0849781862 - - PREDICTED: uncharacterized protein LOC105645768 [Jatropha curcas]
6 Hb_012098_070 0.0893373029 - - PREDICTED: uncharacterized protein LOC105633371 [Jatropha curcas]
7 Hb_000365_240 0.0897321772 - - PREDICTED: mediator of RNA polymerase II transcription subunit 33A-like [Jatropha curcas]
8 Hb_005701_130 0.0898433758 transcription factor TF Family: SWI/SNF-SWI3 PREDICTED: lysine-specific histone demethylase 1 homolog 3 [Jatropha curcas]
9 Hb_002055_040 0.0942632258 - - PREDICTED: large subunit GTPase 1 homolog [Jatropha curcas]
10 Hb_005488_170 0.0953248512 - - PREDICTED: septin and tuftelin-interacting protein 1 homolog 1 [Jatropha curcas]
11 Hb_000181_340 0.0953410241 - - PREDICTED: probable serine/threonine-protein kinase At1g54610 [Jatropha curcas]
12 Hb_002328_040 0.09665521 - - PREDICTED: pentatricopeptide repeat-containing protein At3g53700, chloroplastic [Jatropha curcas]
13 Hb_000130_490 0.0976893869 - - PREDICTED: uncharacterized protein LOC105637408 isoform X2 [Jatropha curcas]
14 Hb_003203_030 0.0982640584 - - PREDICTED: pentatricopeptide repeat-containing protein At2g13600-like [Jatropha curcas]
15 Hb_005348_010 0.1048624985 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000094_070 0.1053077215 - - PREDICTED: 5'-nucleotidase domain-containing protein 4 isoform X2 [Jatropha curcas]
17 Hb_012539_060 0.1060385562 - - PREDICTED: protein EMBRYONIC FLOWER 1 [Jatropha curcas]
18 Hb_003125_170 0.1074914855 - - PREDICTED: uncharacterized protein LOC105648791 [Jatropha curcas]
19 Hb_007820_010 0.1081661641 transcription factor TF Family: SWI/SNF-SWI3 PREDICTED: protein FLOWERING LOCUS D [Jatropha curcas]
20 Hb_003910_060 0.1083857311 - - PREDICTED: pentatricopeptide repeat-containing protein At4g37170 [Jatropha curcas]

Gene co-expression network

sample Hb_003607_070 Hb_003607_070 Hb_002235_200 Hb_002235_200 Hb_003607_070--Hb_002235_200 Hb_001498_010 Hb_001498_010 Hb_003607_070--Hb_001498_010 Hb_012053_090 Hb_012053_090 Hb_003607_070--Hb_012053_090 Hb_004374_110 Hb_004374_110 Hb_003607_070--Hb_004374_110 Hb_012098_070 Hb_012098_070 Hb_003607_070--Hb_012098_070 Hb_000365_240 Hb_000365_240 Hb_003607_070--Hb_000365_240 Hb_002235_200--Hb_004374_110 Hb_006839_010 Hb_006839_010 Hb_002235_200--Hb_006839_010 Hb_140627_020 Hb_140627_020 Hb_002235_200--Hb_140627_020 Hb_000123_180 Hb_000123_180 Hb_002235_200--Hb_000123_180 Hb_003125_170 Hb_003125_170 Hb_002235_200--Hb_003125_170 Hb_000039_150 Hb_000039_150 Hb_001498_010--Hb_000039_150 Hb_000037_190 Hb_000037_190 Hb_001498_010--Hb_000037_190 Hb_004680_120 Hb_004680_120 Hb_001498_010--Hb_004680_120 Hb_003203_030 Hb_003203_030 Hb_001498_010--Hb_003203_030 Hb_002055_040 Hb_002055_040 Hb_001498_010--Hb_002055_040 Hb_004003_040 Hb_004003_040 Hb_001498_010--Hb_004003_040 Hb_005701_130 Hb_005701_130 Hb_012053_090--Hb_005701_130 Hb_002328_040 Hb_002328_040 Hb_012053_090--Hb_002328_040 Hb_005488_170 Hb_005488_170 Hb_012053_090--Hb_005488_170 Hb_002600_060 Hb_002600_060 Hb_012053_090--Hb_002600_060 Hb_000059_230 Hb_000059_230 Hb_012053_090--Hb_000059_230 Hb_004374_110--Hb_006839_010 Hb_001157_240 Hb_001157_240 Hb_004374_110--Hb_001157_240 Hb_012632_010 Hb_012632_010 Hb_004374_110--Hb_012632_010 Hb_002890_130 Hb_002890_130 Hb_004374_110--Hb_002890_130 Hb_001377_100 Hb_001377_100 Hb_004374_110--Hb_001377_100 Hb_099270_030 Hb_099270_030 Hb_012098_070--Hb_099270_030 Hb_012098_070--Hb_005488_170 Hb_000815_170 Hb_000815_170 Hb_012098_070--Hb_000815_170 Hb_005801_020 Hb_005801_020 Hb_012098_070--Hb_005801_020 Hb_005250_030 Hb_005250_030 Hb_012098_070--Hb_005250_030 Hb_000365_240--Hb_002055_040 Hb_001163_060 Hb_001163_060 Hb_000365_240--Hb_001163_060 Hb_000922_030 Hb_000922_030 Hb_000365_240--Hb_000922_030 Hb_000365_240--Hb_001157_240 Hb_002539_070 Hb_002539_070 Hb_000365_240--Hb_002539_070 Hb_004218_190 Hb_004218_190 Hb_000365_240--Hb_004218_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.47427 1.74391 1.26548 1.20085 1.31234 1.26249
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.740253 0.509642 2.0007 1.31097 3.15215

CAGE analysis