Hb_002539_070

Information

Type -
Description -
Location Contig2539: 53490-57353
Sequence    

Annotation

kegg
ID rcu:RCOM_1620940
description pentatricopeptide repeat-containing protein, putative
nr
ID XP_012067764.1
description PREDICTED: pentatricopeptide repeat-containing protein At1g26460, mitochondrial [Jatropha curcas]
swissprot
ID Q9FZD1
description Pentatricopeptide repeat-containing protein At1g26460, mitochondrial OS=Arabidopsis thaliana GN=At1g26460 PE=2 SV=1
trembl
ID A0A067L9X8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15702 PE=4 SV=1
Gene Ontology
ID GO:0009220
description pentatricopeptide repeat-containing protein mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26509: 54087-55151
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002539_070 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At1g26460, mitochondrial [Jatropha curcas]
2 Hb_000635_060 0.0728478727 - - PREDICTED: uncharacterized protein LOC105644797 [Jatropha curcas]
3 Hb_004374_110 0.0737929329 - - PREDICTED: uncharacterized protein LOC105645768 [Jatropha curcas]
4 Hb_003943_110 0.0794515556 transcription factor TF Family: MYB-related Zuotin, putative [Ricinus communis]
5 Hb_000445_090 0.082557207 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase ASHH2 [Jatropha curcas]
6 Hb_012632_010 0.0834963135 - - PREDICTED: uncharacterized protein LOC105640019 [Jatropha curcas]
7 Hb_000365_240 0.0839376887 - - PREDICTED: mediator of RNA polymerase II transcription subunit 33A-like [Jatropha curcas]
8 Hb_001998_240 0.0841452643 - - PREDICTED: small nuclear ribonucleoprotein-associated protein B' [Jatropha curcas]
9 Hb_000773_040 0.0876132318 - - PREDICTED: uncharacterized protein LOC105641863 isoform X2 [Jatropha curcas]
10 Hb_000270_190 0.0881467603 transcription factor TF Family: DDT tRNA ligase, putative [Ricinus communis]
11 Hb_002890_130 0.0881565569 - - tip120, putative [Ricinus communis]
12 Hb_000181_340 0.08883605 - - PREDICTED: probable serine/threonine-protein kinase At1g54610 [Jatropha curcas]
13 Hb_073171_070 0.0914229742 - - PREDICTED: RNA polymerase II-associated factor 1 homolog [Jatropha curcas]
14 Hb_000471_140 0.0918284396 - - PREDICTED: putative pentatricopeptide repeat-containing protein At3g28640 [Prunus mume]
15 Hb_000206_160 0.0925029013 - - PREDICTED: TBCC domain-containing protein 1 [Jatropha curcas]
16 Hb_000094_070 0.0936312215 - - PREDICTED: 5'-nucleotidase domain-containing protein 4 isoform X2 [Jatropha curcas]
17 Hb_001157_240 0.094039513 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 37-like [Jatropha curcas]
18 Hb_011618_070 0.0944369081 - - NMDA receptor-regulated protein [Medicago truncatula]
19 Hb_002411_110 0.0947041908 - - PREDICTED: DNA-directed RNA polymerase III subunit RPC2 [Jatropha curcas]
20 Hb_002071_070 0.0966624573 transcription factor TF Family: RB conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_002539_070 Hb_002539_070 Hb_000635_060 Hb_000635_060 Hb_002539_070--Hb_000635_060 Hb_004374_110 Hb_004374_110 Hb_002539_070--Hb_004374_110 Hb_003943_110 Hb_003943_110 Hb_002539_070--Hb_003943_110 Hb_000445_090 Hb_000445_090 Hb_002539_070--Hb_000445_090 Hb_012632_010 Hb_012632_010 Hb_002539_070--Hb_012632_010 Hb_000365_240 Hb_000365_240 Hb_002539_070--Hb_000365_240 Hb_001716_040 Hb_001716_040 Hb_000635_060--Hb_001716_040 Hb_001478_010 Hb_001478_010 Hb_000635_060--Hb_001478_010 Hb_002686_090 Hb_002686_090 Hb_000635_060--Hb_002686_090 Hb_000482_040 Hb_000482_040 Hb_000635_060--Hb_000482_040 Hb_000504_180 Hb_000504_180 Hb_000635_060--Hb_000504_180 Hb_002235_200 Hb_002235_200 Hb_004374_110--Hb_002235_200 Hb_006839_010 Hb_006839_010 Hb_004374_110--Hb_006839_010 Hb_001157_240 Hb_001157_240 Hb_004374_110--Hb_001157_240 Hb_004374_110--Hb_012632_010 Hb_002890_130 Hb_002890_130 Hb_004374_110--Hb_002890_130 Hb_001377_100 Hb_001377_100 Hb_004374_110--Hb_001377_100 Hb_003943_110--Hb_001157_240 Hb_003943_110--Hb_001716_040 Hb_005582_040 Hb_005582_040 Hb_003943_110--Hb_005582_040 Hb_027073_020 Hb_027073_020 Hb_003943_110--Hb_027073_020 Hb_001998_240 Hb_001998_240 Hb_003943_110--Hb_001998_240 Hb_008033_040 Hb_008033_040 Hb_003943_110--Hb_008033_040 Hb_001163_060 Hb_001163_060 Hb_000445_090--Hb_001163_060 Hb_000193_330 Hb_000193_330 Hb_000445_090--Hb_000193_330 Hb_000445_090--Hb_000635_060 Hb_000181_340 Hb_000181_340 Hb_000445_090--Hb_000181_340 Hb_009288_020 Hb_009288_020 Hb_000445_090--Hb_009288_020 Hb_003058_260 Hb_003058_260 Hb_012632_010--Hb_003058_260 Hb_002071_070 Hb_002071_070 Hb_012632_010--Hb_002071_070 Hb_012632_010--Hb_002890_130 Hb_000856_040 Hb_000856_040 Hb_012632_010--Hb_000856_040 Hb_002830_010 Hb_002830_010 Hb_012632_010--Hb_002830_010 Hb_002055_040 Hb_002055_040 Hb_000365_240--Hb_002055_040 Hb_000365_240--Hb_001163_060 Hb_000922_030 Hb_000922_030 Hb_000365_240--Hb_000922_030 Hb_000365_240--Hb_001157_240 Hb_004218_190 Hb_004218_190 Hb_000365_240--Hb_004218_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.09046 4.03323 3.8795 3.39059 2.87079 2.66572
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.21288 2.56354 4.39425 4.33467 6.27872

CAGE analysis