Hb_003943_110

Information

Type transcription factor
Description TF Family: MYB-related
Location Contig3943: 75069-77018
Sequence    

Annotation

kegg
ID rcu:RCOM_0519910
description Zuotin, putative
nr
ID XP_002528786.1
description Zuotin, putative [Ricinus communis]
swissprot
ID Q1RMH9
description DnaJ homolog subfamily C member 2 OS=Bos taurus GN=DNAJC2 PE=2 SV=1
trembl
ID B9SS17
description Zuotin, putative OS=Ricinus communis GN=RCOM_0519910 PE=4 SV=1
Gene Ontology
ID GO:0003677
description dnaj homolog subfamily c member 2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39483: 74659-77136
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003943_110 0.0 transcription factor TF Family: MYB-related Zuotin, putative [Ricinus communis]
2 Hb_001157_240 0.0553660481 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 37-like [Jatropha curcas]
3 Hb_001716_040 0.0631571909 - - ribonuclease p/mrp subunit, putative [Ricinus communis]
4 Hb_005582_040 0.0636466198 - - PREDICTED: regulator of nonsense transcripts 1 homolog [Jatropha curcas]
5 Hb_027073_020 0.0671190077 - - PREDICTED: testis-expressed sequence 10 protein isoform X2 [Jatropha curcas]
6 Hb_001998_240 0.0677526209 - - PREDICTED: small nuclear ribonucleoprotein-associated protein B' [Jatropha curcas]
7 Hb_008033_040 0.0685975535 - - PREDICTED: MATE efflux family protein 3, chloroplastic [Jatropha curcas]
8 Hb_008959_010 0.0712596628 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000406_200 0.0717539263 - - PREDICTED: translation initiation factor eIF-2B subunit epsilon-like isoform X4 [Jatropha curcas]
10 Hb_000640_040 0.0750833931 - - PREDICTED: bromodomain and WD repeat-containing protein 1 isoform X2 [Jatropha curcas]
11 Hb_004787_050 0.0752395645 - - PREDICTED: RINT1-like protein MAG2 [Jatropha curcas]
12 Hb_002890_130 0.0756046907 - - tip120, putative [Ricinus communis]
13 Hb_000805_100 0.0757982858 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH 10, mitochondrial isoform X1 [Jatropha curcas]
14 Hb_002411_110 0.0760881053 - - PREDICTED: DNA-directed RNA polymerase III subunit RPC2 [Jatropha curcas]
15 Hb_001789_110 0.0763538502 - - ubiquitin-protein ligase, putative [Ricinus communis]
16 Hb_001417_030 0.076501398 - - PREDICTED: inactive poly [ADP-ribose] polymerase RCD1 [Jatropha curcas]
17 Hb_008948_020 0.0770852343 - - hypothetical protein JCGZ_21216 [Jatropha curcas]
18 Hb_001105_020 0.0776440743 - - expressed protein, putative [Ricinus communis]
19 Hb_004109_080 0.0781987958 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 15-like isoform X1 [Populus euphratica]
20 Hb_001999_310 0.0784005594 - - PREDICTED: lysosomal beta glucosidase-like [Jatropha curcas]

Gene co-expression network

sample Hb_003943_110 Hb_003943_110 Hb_001157_240 Hb_001157_240 Hb_003943_110--Hb_001157_240 Hb_001716_040 Hb_001716_040 Hb_003943_110--Hb_001716_040 Hb_005582_040 Hb_005582_040 Hb_003943_110--Hb_005582_040 Hb_027073_020 Hb_027073_020 Hb_003943_110--Hb_027073_020 Hb_001998_240 Hb_001998_240 Hb_003943_110--Hb_001998_240 Hb_008033_040 Hb_008033_040 Hb_003943_110--Hb_008033_040 Hb_001999_290 Hb_001999_290 Hb_001157_240--Hb_001999_290 Hb_005736_020 Hb_005736_020 Hb_001157_240--Hb_005736_020 Hb_001157_240--Hb_005582_040 Hb_000640_040 Hb_000640_040 Hb_001157_240--Hb_000640_040 Hb_001008_120 Hb_001008_120 Hb_001157_240--Hb_001008_120 Hb_001716_040--Hb_000640_040 Hb_001716_040--Hb_005582_040 Hb_008948_020 Hb_008948_020 Hb_001716_040--Hb_008948_020 Hb_004435_030 Hb_004435_030 Hb_001716_040--Hb_004435_030 Hb_000504_180 Hb_000504_180 Hb_001716_040--Hb_000504_180 Hb_002830_010 Hb_002830_010 Hb_005582_040--Hb_002830_010 Hb_001304_110 Hb_001304_110 Hb_005582_040--Hb_001304_110 Hb_005582_040--Hb_000640_040 Hb_004030_080 Hb_004030_080 Hb_005582_040--Hb_004030_080 Hb_001635_120 Hb_001635_120 Hb_005582_040--Hb_001635_120 Hb_001789_110 Hb_001789_110 Hb_027073_020--Hb_001789_110 Hb_001999_310 Hb_001999_310 Hb_027073_020--Hb_001999_310 Hb_000789_200 Hb_000789_200 Hb_027073_020--Hb_000789_200 Hb_029243_030 Hb_029243_030 Hb_027073_020--Hb_029243_030 Hb_122968_010 Hb_122968_010 Hb_027073_020--Hb_122968_010 Hb_000406_200 Hb_000406_200 Hb_027073_020--Hb_000406_200 Hb_002053_150 Hb_002053_150 Hb_001998_240--Hb_002053_150 Hb_006816_280 Hb_006816_280 Hb_001998_240--Hb_006816_280 Hb_004787_050 Hb_004787_050 Hb_001998_240--Hb_004787_050 Hb_003058_260 Hb_003058_260 Hb_001998_240--Hb_003058_260 Hb_002675_130 Hb_002675_130 Hb_001998_240--Hb_002675_130 Hb_008033_040--Hb_001304_110 Hb_008033_040--Hb_027073_020 Hb_008033_040--Hb_001716_040 Hb_001347_060 Hb_001347_060 Hb_008033_040--Hb_001347_060 Hb_000363_310 Hb_000363_310 Hb_008033_040--Hb_000363_310
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.48726 10.9834 10.4249 11.4518 8.08739 9.71549
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.19763 11.5975 12.6672 14.5358 17.3174

CAGE analysis