Hb_122968_010

Information

Type -
Description -
Location Contig122968: 2842-5944
Sequence    

Annotation

kegg
ID tcc:TCM_026127
description Uncharacterized protein isoform 1
nr
ID KDP23743.1
description hypothetical protein JCGZ_23576 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JLT8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23576 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06951: 2866-6427 , PASA_asmbl_06952: 3002-6455 , PASA_asmbl_06953: 3002-6455
cDNA
(Sanger)
(ID:Location)		 043_N21.ab1: 3212-6455

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_122968_010 0.0 - - hypothetical protein JCGZ_23576 [Jatropha curcas]
2 Hb_000656_070 0.0580384507 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
3 Hb_001789_110 0.0600580067 - - ubiquitin-protein ligase, putative [Ricinus communis]
4 Hb_027073_020 0.0643865918 - - PREDICTED: testis-expressed sequence 10 protein isoform X2 [Jatropha curcas]
5 Hb_003117_030 0.0693033667 - - PREDICTED: protein RCC2 homolog [Jatropha curcas]
6 Hb_000406_200 0.069936525 - - PREDICTED: translation initiation factor eIF-2B subunit epsilon-like isoform X4 [Jatropha curcas]
7 Hb_002897_090 0.0711737409 - - conserved hypothetical protein [Ricinus communis]
8 Hb_001862_130 0.0743295833 - - Protein FRIGIDA, putative [Ricinus communis]
9 Hb_003734_010 0.0761327383 - - PREDICTED: double-strand break repair protein MRE11 [Jatropha curcas]
10 Hb_000789_200 0.0775951253 - - mitochondrial processing peptidase alpha subunit, putative [Ricinus communis]
11 Hb_002414_050 0.0780768681 - - hypothetical protein CICLE_v10000243mg [Citrus clementina]
12 Hb_003517_040 0.0814906744 - - PREDICTED: putative DUF21 domain-containing protein At3g13070, chloroplastic [Jatropha curcas]
13 Hb_003544_160 0.0822026929 - - -
14 Hb_041290_020 0.082658941 - - PREDICTED: centromere/kinetochore protein zw10 homolog isoform X2 [Jatropha curcas]
15 Hb_000359_210 0.0831589518 - - conserved hypothetical protein [Ricinus communis]
16 Hb_188281_040 0.0834295565 - - PREDICTED: transcription initiation factor TFIID subunit 12 [Jatropha curcas]
17 Hb_000720_050 0.0835677606 - - PREDICTED: uncharacterized protein LOC105645857 isoform X1 [Jatropha curcas]
18 Hb_004679_030 0.0838435495 - - PREDICTED: LOW QUALITY PROTEIN: F-box protein SKIP23-like [Jatropha curcas]
19 Hb_008387_020 0.0839051448 - - PREDICTED: FHA domain-containing protein DDL isoform X1 [Jatropha curcas]
20 Hb_000358_050 0.0843648626 - - PREDICTED: uncharacterized protein LOC105633378 [Jatropha curcas]

Gene co-expression network

sample Hb_122968_010 Hb_122968_010 Hb_000656_070 Hb_000656_070 Hb_122968_010--Hb_000656_070 Hb_001789_110 Hb_001789_110 Hb_122968_010--Hb_001789_110 Hb_027073_020 Hb_027073_020 Hb_122968_010--Hb_027073_020 Hb_003117_030 Hb_003117_030 Hb_122968_010--Hb_003117_030 Hb_000406_200 Hb_000406_200 Hb_122968_010--Hb_000406_200 Hb_002897_090 Hb_002897_090 Hb_122968_010--Hb_002897_090 Hb_001862_130 Hb_001862_130 Hb_000656_070--Hb_001862_130 Hb_000656_070--Hb_000406_200 Hb_003734_010 Hb_003734_010 Hb_000656_070--Hb_003734_010 Hb_008484_060 Hb_008484_060 Hb_000656_070--Hb_008484_060 Hb_000656_070--Hb_001789_110 Hb_001789_110--Hb_027073_020 Hb_003517_040 Hb_003517_040 Hb_001789_110--Hb_003517_040 Hb_007413_010 Hb_007413_010 Hb_001789_110--Hb_007413_010 Hb_188281_040 Hb_188281_040 Hb_001789_110--Hb_188281_040 Hb_006913_020 Hb_006913_020 Hb_001789_110--Hb_006913_020 Hb_001999_310 Hb_001999_310 Hb_027073_020--Hb_001999_310 Hb_000789_200 Hb_000789_200 Hb_027073_020--Hb_000789_200 Hb_029243_030 Hb_029243_030 Hb_027073_020--Hb_029243_030 Hb_027073_020--Hb_000406_200 Hb_003117_030--Hb_007413_010 Hb_002581_010 Hb_002581_010 Hb_003117_030--Hb_002581_010 Hb_005489_040 Hb_005489_040 Hb_003117_030--Hb_005489_040 Hb_003117_030--Hb_188281_040 Hb_003117_030--Hb_001789_110 Hb_001925_060 Hb_001925_060 Hb_003117_030--Hb_001925_060 Hb_000138_100 Hb_000138_100 Hb_000406_200--Hb_000138_100 Hb_000347_430 Hb_000347_430 Hb_000406_200--Hb_000347_430 Hb_000406_200--Hb_001862_130 Hb_004109_080 Hb_004109_080 Hb_000406_200--Hb_004109_080 Hb_000406_200--Hb_188281_040 Hb_000340_530 Hb_000340_530 Hb_000406_200--Hb_000340_530 Hb_002027_080 Hb_002027_080 Hb_002897_090--Hb_002027_080 Hb_002883_030 Hb_002883_030 Hb_002897_090--Hb_002883_030 Hb_000359_210 Hb_000359_210 Hb_002897_090--Hb_000359_210 Hb_004679_030 Hb_004679_030 Hb_002897_090--Hb_004679_030 Hb_000441_090 Hb_000441_090 Hb_002897_090--Hb_000441_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.12483 2.98652 2.76792 3.90671 2.60104 4.02134
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.22407 3.33695 2.22848 4.71217 6.03009

CAGE analysis