Hb_001862_130

Information

Type -
Description -
Location Contig1862: 130270-133707
Sequence    

Annotation

kegg
ID rcu:RCOM_1154790
description Protein FRIGIDA, putative
nr
ID XP_002524951.1
description Protein FRIGIDA, putative [Ricinus communis]
swissprot
ID Q67ZB3
description FRIGIDA-like protein 3 OS=Arabidopsis thaliana GN=FRL3 PE=1 SV=1
trembl
ID B9SG32
description Protein FRIGIDA, putative OS=Ricinus communis GN=RCOM_1154790 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18297: 130076-132056 , PASA_asmbl_18298: 132118-132252 , PASA_asmbl_18299: 132257-133670 , PASA_asmbl_18300: 132889-132995
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001862_130 0.0 - - Protein FRIGIDA, putative [Ricinus communis]
2 Hb_000656_070 0.0472925811 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
3 Hb_000406_200 0.0608096273 - - PREDICTED: translation initiation factor eIF-2B subunit epsilon-like isoform X4 [Jatropha curcas]
4 Hb_188281_040 0.0689505356 - - PREDICTED: transcription initiation factor TFIID subunit 12 [Jatropha curcas]
5 Hb_003734_010 0.0721518329 - - PREDICTED: double-strand break repair protein MRE11 [Jatropha curcas]
6 Hb_122968_010 0.0743295833 - - hypothetical protein JCGZ_23576 [Jatropha curcas]
7 Hb_002205_030 0.0770430589 - - PREDICTED: alpha-galactosidase 3 [Jatropha curcas]
8 Hb_000720_050 0.078487932 - - PREDICTED: uncharacterized protein LOC105645857 isoform X1 [Jatropha curcas]
9 Hb_057688_010 0.0792001706 transcription factor TF Family: Jumonji PREDICTED: putative lysine-specific demethylase JMJ16 isoform X2 [Jatropha curcas]
10 Hb_000347_430 0.0800659715 - - PREDICTED: mitochondrial ubiquitin ligase activator of nfkb 1-A [Jatropha curcas]
11 Hb_001789_110 0.082936888 - - ubiquitin-protein ligase, putative [Ricinus communis]
12 Hb_003517_040 0.0835219487 - - PREDICTED: putative DUF21 domain-containing protein At3g13070, chloroplastic [Jatropha curcas]
13 Hb_000409_050 0.083721782 transcription factor TF Family: HMG PREDICTED: FACT complex subunit SSRP1 [Jatropha curcas]
14 Hb_001925_060 0.0843782834 - - PREDICTED: putative RNA polymerase II subunit B1 CTD phosphatase RPAP2 homolog [Jatropha curcas]
15 Hb_001301_150 0.0844998882 - - PREDICTED: UPF0136 membrane protein At2g26240 [Vitis vinifera]
16 Hb_001341_180 0.0853182937 - - PREDICTED: transmembrane protein 209 [Jatropha curcas]
17 Hb_000317_100 0.0867893438 - - PREDICTED: uncharacterized protein LOC105646995 [Jatropha curcas]
18 Hb_001157_160 0.087754491 - - PREDICTED: E3 ubiquitin-protein ligase BRE1-like 2 isoform X1 [Jatropha curcas]
19 Hb_000053_040 0.0884102968 - - hypothetical protein CISIN_1g0010392mg, partial [Citrus sinensis]
20 Hb_000749_190 0.0890473441 - - PREDICTED: nucleolar GTP-binding protein 2 [Populus euphratica]

Gene co-expression network

sample Hb_001862_130 Hb_001862_130 Hb_000656_070 Hb_000656_070 Hb_001862_130--Hb_000656_070 Hb_000406_200 Hb_000406_200 Hb_001862_130--Hb_000406_200 Hb_188281_040 Hb_188281_040 Hb_001862_130--Hb_188281_040 Hb_003734_010 Hb_003734_010 Hb_001862_130--Hb_003734_010 Hb_122968_010 Hb_122968_010 Hb_001862_130--Hb_122968_010 Hb_002205_030 Hb_002205_030 Hb_001862_130--Hb_002205_030 Hb_000656_070--Hb_122968_010 Hb_000656_070--Hb_000406_200 Hb_000656_070--Hb_003734_010 Hb_008484_060 Hb_008484_060 Hb_000656_070--Hb_008484_060 Hb_001789_110 Hb_001789_110 Hb_000656_070--Hb_001789_110 Hb_000138_100 Hb_000138_100 Hb_000406_200--Hb_000138_100 Hb_000347_430 Hb_000347_430 Hb_000406_200--Hb_000347_430 Hb_004109_080 Hb_004109_080 Hb_000406_200--Hb_004109_080 Hb_000406_200--Hb_188281_040 Hb_000340_530 Hb_000340_530 Hb_000406_200--Hb_000340_530 Hb_188281_040--Hb_001789_110 Hb_003117_030 Hb_003117_030 Hb_188281_040--Hb_003117_030 Hb_005489_040 Hb_005489_040 Hb_188281_040--Hb_005489_040 Hb_000409_050 Hb_000409_050 Hb_188281_040--Hb_000409_050 Hb_000363_310 Hb_000363_310 Hb_188281_040--Hb_000363_310 Hb_004327_040 Hb_004327_040 Hb_003734_010--Hb_004327_040 Hb_003913_070 Hb_003913_070 Hb_003734_010--Hb_003913_070 Hb_001814_030 Hb_001814_030 Hb_003734_010--Hb_001814_030 Hb_009976_020 Hb_009976_020 Hb_003734_010--Hb_009976_020 Hb_003517_040 Hb_003517_040 Hb_003734_010--Hb_003517_040 Hb_012760_100 Hb_012760_100 Hb_003734_010--Hb_012760_100 Hb_122968_010--Hb_001789_110 Hb_027073_020 Hb_027073_020 Hb_122968_010--Hb_027073_020 Hb_122968_010--Hb_003117_030 Hb_122968_010--Hb_000406_200 Hb_002897_090 Hb_002897_090 Hb_122968_010--Hb_002897_090 Hb_057688_010 Hb_057688_010 Hb_002205_030--Hb_057688_010 Hb_028960_020 Hb_028960_020 Hb_002205_030--Hb_028960_020 Hb_000797_040 Hb_000797_040 Hb_002205_030--Hb_000797_040 Hb_002205_030--Hb_003517_040 Hb_000665_120 Hb_000665_120 Hb_002205_030--Hb_000665_120 Hb_001377_190 Hb_001377_190 Hb_002205_030--Hb_001377_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.16509 6.4131 5.41962 5.91114 6.60318 6.3502
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.6403 5.79401 3.54068 9.17776 9.86503

CAGE analysis