Hb_000665_120

Information

Type transcription factor
Description TF Family: SET
Location Contig665: 110590-124236
Sequence    

Annotation

kegg
ID vvi:100255892
description uncharacterized LOC100255892
nr
ID XP_012076482.1
description PREDICTED: uncharacterized protein LOC105637593 [Jatropha curcas]
swissprot
ID P0CB22
description Histone-lysine N-methyltransferase ATX2 OS=Arabidopsis thaliana GN=ATX2 PE=2 SV=1
trembl
ID A0A067KEW2
description Histone-lysine N-methyltransferase OS=Jatropha curcas GN=JCGZ_07124 PE=4 SV=1
Gene Ontology
ID GO:0008270
description histone-lysine n-methyltransferase atx1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53195: 111000-112464 , PASA_asmbl_53196: 114242-114871 , PASA_asmbl_53197: 115754-116116 , PASA_asmbl_53199: 117106-118229 , PASA_asmbl_53200: 118238-120216 , PASA_asmbl_53201: 120267-121262 , PASA_asmbl_53202: 121272-122261 , PASA_asmbl_53203: 122521-124241
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000665_120 0.0 transcription factor TF Family: SET PREDICTED: uncharacterized protein LOC105637593 [Jatropha curcas]
2 Hb_007765_100 0.0543279833 - - PREDICTED: helicase SKI2W [Jatropha curcas]
3 Hb_000797_040 0.05861656 - - PREDICTED: uncharacterized protein LOC105645914 [Jatropha curcas]
4 Hb_028960_020 0.0642491232 - - PREDICTED: uncharacterized protein LOC105646163 isoform X1 [Jatropha curcas]
5 Hb_002205_030 0.0656827601 - - PREDICTED: alpha-galactosidase 3 [Jatropha curcas]
6 Hb_008059_010 0.0676312561 - - PREDICTED: pentatricopeptide repeat-containing protein At5g04810, chloroplastic [Jatropha curcas]
7 Hb_002811_270 0.0708871046 - - PREDICTED: peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase [Jatropha curcas]
8 Hb_001377_190 0.0711387747 transcription factor TF Family: PHD PREDICTED: histone-lysine N-methyltransferase ATX3 isoform X2 [Jatropha curcas]
9 Hb_000134_270 0.0728852458 - - arginine/serine rich splicing factor sf4/14, putative [Ricinus communis]
10 Hb_000025_690 0.0772437148 - - spliceosome associated protein, putative [Ricinus communis]
11 Hb_031284_010 0.0775304331 - - PREDICTED: uncharacterized protein LOC105633543 [Jatropha curcas]
12 Hb_000212_230 0.0777804163 - - PREDICTED: endoribonuclease Dicer homolog 2 [Jatropha curcas]
13 Hb_002218_090 0.0784293936 - - Poly(rC)-binding protein, putative [Ricinus communis]
14 Hb_007426_110 0.0784417975 - - PREDICTED: vacuolar fusion protein CCZ1 homolog isoform X2 [Jatropha curcas]
15 Hb_000238_040 0.0796063116 - - PREDICTED: uncharacterized protein LOC102611758 [Citrus sinensis]
16 Hb_001005_130 0.0798943909 - - PREDICTED: uncharacterized protein LOC105630220 isoform X4 [Jatropha curcas]
17 Hb_004800_180 0.0799921583 - - PREDICTED: succinate dehydrogenase [ubiquinone] flavoprotein subunit 1, mitochondrial [Populus euphratica]
18 Hb_002889_010 0.0804865337 - - ubx domain-containing, putative [Ricinus communis]
19 Hb_000214_050 0.0817403063 - - PREDICTED: protein IQ-DOMAIN 1 isoform X1 [Jatropha curcas]
20 Hb_001226_150 0.0818673658 - - PREDICTED: serine/threonine-protein kinase 38-like isoform X3 [Jatropha curcas]

Gene co-expression network

sample Hb_000665_120 Hb_000665_120 Hb_007765_100 Hb_007765_100 Hb_000665_120--Hb_007765_100 Hb_000797_040 Hb_000797_040 Hb_000665_120--Hb_000797_040 Hb_028960_020 Hb_028960_020 Hb_000665_120--Hb_028960_020 Hb_002205_030 Hb_002205_030 Hb_000665_120--Hb_002205_030 Hb_008059_010 Hb_008059_010 Hb_000665_120--Hb_008059_010 Hb_002811_270 Hb_002811_270 Hb_000665_120--Hb_002811_270 Hb_007765_100--Hb_008059_010 Hb_170416_010 Hb_170416_010 Hb_007765_100--Hb_170416_010 Hb_002218_090 Hb_002218_090 Hb_007765_100--Hb_002218_090 Hb_000363_310 Hb_000363_310 Hb_007765_100--Hb_000363_310 Hb_001226_150 Hb_001226_150 Hb_007765_100--Hb_001226_150 Hb_000797_040--Hb_002205_030 Hb_000797_040--Hb_028960_020 Hb_004310_140 Hb_004310_140 Hb_000797_040--Hb_004310_140 Hb_000797_040--Hb_002218_090 Hb_007426_110 Hb_007426_110 Hb_000797_040--Hb_007426_110 Hb_028960_020--Hb_007426_110 Hb_006483_110 Hb_006483_110 Hb_028960_020--Hb_006483_110 Hb_001348_080 Hb_001348_080 Hb_028960_020--Hb_001348_080 Hb_028960_020--Hb_002205_030 Hb_004846_220 Hb_004846_220 Hb_028960_020--Hb_004846_220 Hb_057688_010 Hb_057688_010 Hb_002205_030--Hb_057688_010 Hb_003517_040 Hb_003517_040 Hb_002205_030--Hb_003517_040 Hb_001377_190 Hb_001377_190 Hb_002205_030--Hb_001377_190 Hb_031284_010 Hb_031284_010 Hb_008059_010--Hb_031284_010 Hb_000115_280 Hb_000115_280 Hb_008059_010--Hb_000115_280 Hb_000457_230 Hb_000457_230 Hb_008059_010--Hb_000457_230 Hb_000836_410 Hb_000836_410 Hb_008059_010--Hb_000836_410 Hb_000205_260 Hb_000205_260 Hb_008059_010--Hb_000205_260 Hb_000214_050 Hb_000214_050 Hb_002811_270--Hb_000214_050 Hb_002326_040 Hb_002326_040 Hb_002811_270--Hb_002326_040 Hb_001518_080 Hb_001518_080 Hb_002811_270--Hb_001518_080 Hb_012506_030 Hb_012506_030 Hb_002811_270--Hb_012506_030 Hb_000373_080 Hb_000373_080 Hb_002811_270--Hb_000373_080 Hb_003186_020 Hb_003186_020 Hb_002811_270--Hb_003186_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.38379 3.30303 4.34947 2.91609 2.84873 3.01588
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.25491 1.99351 2.22185 3.21671 4.9711

CAGE analysis