Hb_008059_010

Information

Type -
Description -
Location Contig8059: 6930-10592
Sequence    

Annotation

kegg
ID rcu:RCOM_1543770
description pentatricopeptide repeat-containing protein, putative
nr
ID XP_012092583.1
description PREDICTED: pentatricopeptide repeat-containing protein At5g04810, chloroplastic [Jatropha curcas]
swissprot
ID Q0WMY5
description Pentatricopeptide repeat-containing protein At5g04810, chloroplastic OS=Arabidopsis thaliana GN=PPR4 PE=1 SV=1
trembl
ID A0A067LJX4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22497 PE=4 SV=1
Gene Ontology
ID GO:0000166
description pentatricopeptide repeat-containing protein chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59036: 6932-8932 , PASA_asmbl_59037: 8975-9889
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008059_010 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At5g04810, chloroplastic [Jatropha curcas]
2 Hb_031284_010 0.0410615737 - - PREDICTED: uncharacterized protein LOC105633543 [Jatropha curcas]
3 Hb_007765_100 0.0565267476 - - PREDICTED: helicase SKI2W [Jatropha curcas]
4 Hb_000115_280 0.0587168422 - - PREDICTED: glutamine--tRNA ligase [Jatropha curcas]
5 Hb_000457_230 0.061569753 - - PREDICTED: ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic [Jatropha curcas]
6 Hb_000836_410 0.0651291222 - - sec10, putative [Ricinus communis]
7 Hb_000205_260 0.0659984756 transcription factor TF Family: SNF2 hypothetical protein JCGZ_23567 [Jatropha curcas]
8 Hb_003186_020 0.0662821766 - - PREDICTED: histone deacetylase 15 isoform X1 [Jatropha curcas]
9 Hb_007044_110 0.0665264027 - - nucleic acid binding protein, putative [Ricinus communis]
10 Hb_005288_070 0.0669777899 transcription factor TF Family: G2-like DNA binding protein, putative [Ricinus communis]
11 Hb_000390_230 0.0671706035 - - PREDICTED: transducin beta-like protein 3 [Jatropha curcas]
12 Hb_000864_030 0.0673767773 - - PREDICTED: F-box-like/WD repeat-containing protein TBL1XR1 isoform X2 [Jatropha curcas]
13 Hb_000665_120 0.0676312561 transcription factor TF Family: SET PREDICTED: uncharacterized protein LOC105637593 [Jatropha curcas]
14 Hb_138435_010 0.0677718509 transcription factor TF Family: SWI/SNF-BAF60b brg-1 associated factor, putative [Ricinus communis]
15 Hb_005867_070 0.0692063552 - - DNA binding protein, putative [Ricinus communis]
16 Hb_001153_210 0.0696596293 - - PREDICTED: uncharacterized protein LOC105645887 isoform X1 [Jatropha curcas]
17 Hb_002218_090 0.0711824603 - - Poly(rC)-binding protein, putative [Ricinus communis]
18 Hb_053079_020 0.0716803521 - - PREDICTED: brefeldin A-inhibited guanine nucleotide-exchange protein 1 [Jatropha curcas]
19 Hb_025557_050 0.072293991 - - PREDICTED: pentatricopeptide repeat-containing protein At1g74630 [Jatropha curcas]
20 Hb_000174_170 0.0729940782 - - PREDICTED: splicing factor U2AF-associated protein 2 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_008059_010 Hb_008059_010 Hb_031284_010 Hb_031284_010 Hb_008059_010--Hb_031284_010 Hb_007765_100 Hb_007765_100 Hb_008059_010--Hb_007765_100 Hb_000115_280 Hb_000115_280 Hb_008059_010--Hb_000115_280 Hb_000457_230 Hb_000457_230 Hb_008059_010--Hb_000457_230 Hb_000836_410 Hb_000836_410 Hb_008059_010--Hb_000836_410 Hb_000205_260 Hb_000205_260 Hb_008059_010--Hb_000205_260 Hb_031284_010--Hb_000115_280 Hb_003186_020 Hb_003186_020 Hb_031284_010--Hb_003186_020 Hb_138435_010 Hb_138435_010 Hb_031284_010--Hb_138435_010 Hb_000120_210 Hb_000120_210 Hb_031284_010--Hb_000120_210 Hb_031284_010--Hb_000457_230 Hb_000665_120 Hb_000665_120 Hb_007765_100--Hb_000665_120 Hb_170416_010 Hb_170416_010 Hb_007765_100--Hb_170416_010 Hb_002218_090 Hb_002218_090 Hb_007765_100--Hb_002218_090 Hb_000363_310 Hb_000363_310 Hb_007765_100--Hb_000363_310 Hb_001226_150 Hb_001226_150 Hb_007765_100--Hb_001226_150 Hb_000115_280--Hb_003186_020 Hb_000390_230 Hb_000390_230 Hb_000115_280--Hb_000390_230 Hb_053079_020 Hb_053079_020 Hb_000115_280--Hb_053079_020 Hb_000115_280--Hb_000457_230 Hb_007044_110 Hb_007044_110 Hb_000457_230--Hb_007044_110 Hb_000457_230--Hb_000205_260 Hb_000457_230--Hb_003186_020 Hb_011972_020 Hb_011972_020 Hb_000457_230--Hb_011972_020 Hb_005523_020 Hb_005523_020 Hb_000457_230--Hb_005523_020 Hb_032202_080 Hb_032202_080 Hb_000457_230--Hb_032202_080 Hb_000836_410--Hb_000390_230 Hb_008568_020 Hb_008568_020 Hb_000836_410--Hb_008568_020 Hb_000230_090 Hb_000230_090 Hb_000836_410--Hb_000230_090 Hb_002701_150 Hb_002701_150 Hb_000836_410--Hb_002701_150 Hb_000836_410--Hb_000457_230 Hb_000243_210 Hb_000243_210 Hb_000836_410--Hb_000243_210 Hb_000205_260--Hb_005523_020 Hb_000205_260--Hb_007044_110 Hb_005288_070 Hb_005288_070 Hb_000205_260--Hb_005288_070 Hb_007305_020 Hb_007305_020 Hb_000205_260--Hb_007305_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.1458 12.9177 15.764 8.75556 12.226 12.7888
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.27272 9.08439 7.7077 9.55834 16.8309

CAGE analysis