Hb_000115_280

Information

Type -
Description -
Location Contig115: 290454-302890
Sequence    

Annotation

kegg
ID rcu:RCOM_1309310
description glutaminyl-tRNA synthetase, putative (EC:6.1.1.18)
nr
ID XP_012067060.1
description PREDICTED: glutamine--tRNA ligase [Jatropha curcas]
swissprot
ID P52780
description Glutamine--tRNA ligase OS=Lupinus luteus PE=2 SV=2
trembl
ID A0A067LDA3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01857 PE=3 SV=1
Gene Ontology
ID GO:0005737
description glutamine--trna ligase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04542: 290406-302671
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000115_280 0.0 - - PREDICTED: glutamine--tRNA ligase [Jatropha curcas]
2 Hb_031284_010 0.0490709682 - - PREDICTED: uncharacterized protein LOC105633543 [Jatropha curcas]
3 Hb_003186_020 0.0562598408 - - PREDICTED: histone deacetylase 15 isoform X1 [Jatropha curcas]
4 Hb_008059_010 0.0587168422 - - PREDICTED: pentatricopeptide repeat-containing protein At5g04810, chloroplastic [Jatropha curcas]
5 Hb_000390_230 0.0607048345 - - PREDICTED: transducin beta-like protein 3 [Jatropha curcas]
6 Hb_053079_020 0.0616401323 - - PREDICTED: brefeldin A-inhibited guanine nucleotide-exchange protein 1 [Jatropha curcas]
7 Hb_000457_230 0.0643121593 - - PREDICTED: ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic [Jatropha curcas]
8 Hb_138435_010 0.0662545327 transcription factor TF Family: SWI/SNF-BAF60b brg-1 associated factor, putative [Ricinus communis]
9 Hb_000836_410 0.0673253834 - - sec10, putative [Ricinus communis]
10 Hb_000567_070 0.0689344332 - - autophagy protein, putative [Ricinus communis]
11 Hb_007821_020 0.0695623447 - - PREDICTED: 5'-nucleotidase domain-containing protein DDB_G0275467 isoform X2 [Jatropha curcas]
12 Hb_000864_030 0.0706115346 - - PREDICTED: F-box-like/WD repeat-containing protein TBL1XR1 isoform X2 [Jatropha curcas]
13 Hb_000563_130 0.0716461521 - - PREDICTED: WD repeat-containing protein 43 [Jatropha curcas]
14 Hb_000254_100 0.0721031307 - - PREDICTED: glyoxylate/hydroxypyruvate reductase A HPR2 [Jatropha curcas]
15 Hb_000563_420 0.0724068582 - - PREDICTED: acyl-CoA dehydrogenase family member 10 [Jatropha curcas]
16 Hb_017151_010 0.0732899205 - - PREDICTED: uncharacterized protein LOC105641966 [Jatropha curcas]
17 Hb_007044_110 0.0753909647 - - nucleic acid binding protein, putative [Ricinus communis]
18 Hb_003225_020 0.0771117319 transcription factor TF Family: HB PREDICTED: homeobox protein HAT3.1 [Jatropha curcas]
19 Hb_032202_080 0.0773170467 - - PREDICTED: peroxisome biogenesis protein 16-like isoform X1 [Jatropha curcas]
20 Hb_000205_260 0.0779254883 transcription factor TF Family: SNF2 hypothetical protein JCGZ_23567 [Jatropha curcas]

Gene co-expression network

sample Hb_000115_280 Hb_000115_280 Hb_031284_010 Hb_031284_010 Hb_000115_280--Hb_031284_010 Hb_003186_020 Hb_003186_020 Hb_000115_280--Hb_003186_020 Hb_008059_010 Hb_008059_010 Hb_000115_280--Hb_008059_010 Hb_000390_230 Hb_000390_230 Hb_000115_280--Hb_000390_230 Hb_053079_020 Hb_053079_020 Hb_000115_280--Hb_053079_020 Hb_000457_230 Hb_000457_230 Hb_000115_280--Hb_000457_230 Hb_031284_010--Hb_008059_010 Hb_031284_010--Hb_003186_020 Hb_138435_010 Hb_138435_010 Hb_031284_010--Hb_138435_010 Hb_000120_210 Hb_000120_210 Hb_031284_010--Hb_000120_210 Hb_031284_010--Hb_000457_230 Hb_000373_080 Hb_000373_080 Hb_003186_020--Hb_000373_080 Hb_003186_020--Hb_000457_230 Hb_000175_410 Hb_000175_410 Hb_003186_020--Hb_000175_410 Hb_000214_050 Hb_000214_050 Hb_003186_020--Hb_000214_050 Hb_007765_100 Hb_007765_100 Hb_008059_010--Hb_007765_100 Hb_008059_010--Hb_000457_230 Hb_000836_410 Hb_000836_410 Hb_008059_010--Hb_000836_410 Hb_000205_260 Hb_000205_260 Hb_008059_010--Hb_000205_260 Hb_000390_230--Hb_000836_410 Hb_004994_010 Hb_004994_010 Hb_000390_230--Hb_004994_010 Hb_000567_070 Hb_000567_070 Hb_000390_230--Hb_000567_070 Hb_000563_130 Hb_000563_130 Hb_000390_230--Hb_000563_130 Hb_000390_230--Hb_138435_010 Hb_053079_020--Hb_000214_050 Hb_017151_010 Hb_017151_010 Hb_053079_020--Hb_017151_010 Hb_053079_020--Hb_003186_020 Hb_008247_020 Hb_008247_020 Hb_053079_020--Hb_008247_020 Hb_000243_210 Hb_000243_210 Hb_053079_020--Hb_000243_210 Hb_007044_110 Hb_007044_110 Hb_000457_230--Hb_007044_110 Hb_000457_230--Hb_000205_260 Hb_011972_020 Hb_011972_020 Hb_000457_230--Hb_011972_020 Hb_005523_020 Hb_005523_020 Hb_000457_230--Hb_005523_020 Hb_032202_080 Hb_032202_080 Hb_000457_230--Hb_032202_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.0626 15.5771 25.2742 11.415 20.3818 15.7237
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.19527 10.5034 10.7879 13.9912 21.5357

CAGE analysis