Hb_000175_410

Information

Type -
Description -
Location Contig175: 285549-292207
Sequence    

Annotation

kegg
ID pda:103719228
description DEAD-box ATP-dependent RNA helicase 15
nr
ID XP_012073201.1
description PREDICTED: DEAD-box ATP-dependent RNA helicase 56-like isoform X2 [Jatropha curcas]
swissprot
ID Q9LFN6
description DEAD-box ATP-dependent RNA helicase 56 OS=Arabidopsis thaliana GN=RH56 PE=1 SV=2
trembl
ID A0A067KLR9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06153 PE=4 SV=1
Gene Ontology
ID GO:0003676
description dead-box atp-dependent rna helicase 56-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16713: 285600-292171
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000175_410 0.0 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 56-like isoform X2 [Jatropha curcas]
2 Hb_003186_020 0.053599513 - - PREDICTED: histone deacetylase 15 isoform X1 [Jatropha curcas]
3 Hb_003093_040 0.062601556 - - PREDICTED: nucleolar complex protein 4 homolog isoform X1 [Jatropha curcas]
4 Hb_013358_070 0.0662859488 - - protein with unknown function [Ricinus communis]
5 Hb_031284_010 0.067636379 - - PREDICTED: uncharacterized protein LOC105633543 [Jatropha curcas]
6 Hb_000011_270 0.0683598781 - - PREDICTED: pumilio homolog 23 [Jatropha curcas]
7 Hb_000523_080 0.0689979124 - - PREDICTED: LOW QUALITY PROTEIN: beta-catenin-like protein 1 [Jatropha curcas]
8 Hb_000457_230 0.0706093069 - - PREDICTED: ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic [Jatropha curcas]
9 Hb_030414_040 0.0716844638 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase ASHH3 isoform X1 [Jatropha curcas]
10 Hb_004324_330 0.0740394143 - - PREDICTED: uncharacterized protein LOC105648374 [Jatropha curcas]
11 Hb_007283_010 0.0743789211 - - PREDICTED: pre-mRNA-processing protein 40C isoform X1 [Jatropha curcas]
12 Hb_001158_160 0.0770958424 - - PREDICTED: RNA pseudouridine synthase 7 isoform X1 [Jatropha curcas]
13 Hb_033642_040 0.0782271279 - - PREDICTED: 5'-nucleotidase domain-containing protein 4 isoform X1 [Jatropha curcas]
14 Hb_000336_020 0.0788317354 - - PREDICTED: phospholipid-transporting ATPase 2 [Jatropha curcas]
15 Hb_000120_210 0.0797894038 - - PREDICTED: uncharacterized protein LOC105630189 [Jatropha curcas]
16 Hb_031091_020 0.0813611881 - - PREDICTED: uncharacterized protein LOC105629655 [Jatropha curcas]
17 Hb_002374_230 0.0817379648 - - PREDICTED: centromere-associated protein E [Jatropha curcas]
18 Hb_000111_170 0.08233006 - - PREDICTED: uncharacterized protein LOC105631234 isoform X1 [Jatropha curcas]
19 Hb_007044_110 0.0827119351 - - nucleic acid binding protein, putative [Ricinus communis]
20 Hb_000115_280 0.0828550139 - - PREDICTED: glutamine--tRNA ligase [Jatropha curcas]

Gene co-expression network

sample Hb_000175_410 Hb_000175_410 Hb_003186_020 Hb_003186_020 Hb_000175_410--Hb_003186_020 Hb_003093_040 Hb_003093_040 Hb_000175_410--Hb_003093_040 Hb_013358_070 Hb_013358_070 Hb_000175_410--Hb_013358_070 Hb_031284_010 Hb_031284_010 Hb_000175_410--Hb_031284_010 Hb_000011_270 Hb_000011_270 Hb_000175_410--Hb_000011_270 Hb_000523_080 Hb_000523_080 Hb_000175_410--Hb_000523_080 Hb_000373_080 Hb_000373_080 Hb_003186_020--Hb_000373_080 Hb_000457_230 Hb_000457_230 Hb_003186_020--Hb_000457_230 Hb_003186_020--Hb_031284_010 Hb_000214_050 Hb_000214_050 Hb_003186_020--Hb_000214_050 Hb_000115_280 Hb_000115_280 Hb_003186_020--Hb_000115_280 Hb_003093_040--Hb_000011_270 Hb_001221_180 Hb_001221_180 Hb_003093_040--Hb_001221_180 Hb_001999_140 Hb_001999_140 Hb_003093_040--Hb_001999_140 Hb_002374_230 Hb_002374_230 Hb_003093_040--Hb_002374_230 Hb_000661_120 Hb_000661_120 Hb_003093_040--Hb_000661_120 Hb_001723_140 Hb_001723_140 Hb_013358_070--Hb_001723_140 Hb_013358_070--Hb_000523_080 Hb_003943_020 Hb_003943_020 Hb_013358_070--Hb_003943_020 Hb_009771_110 Hb_009771_110 Hb_013358_070--Hb_009771_110 Hb_000318_120 Hb_000318_120 Hb_013358_070--Hb_000318_120 Hb_008059_010 Hb_008059_010 Hb_031284_010--Hb_008059_010 Hb_031284_010--Hb_000115_280 Hb_138435_010 Hb_138435_010 Hb_031284_010--Hb_138435_010 Hb_000120_210 Hb_000120_210 Hb_031284_010--Hb_000120_210 Hb_031284_010--Hb_000457_230 Hb_000011_270--Hb_001221_180 Hb_000568_050 Hb_000568_050 Hb_000011_270--Hb_000568_050 Hb_002357_070 Hb_002357_070 Hb_000011_270--Hb_002357_070 Hb_000001_170 Hb_000001_170 Hb_000011_270--Hb_000001_170 Hb_128548_010 Hb_128548_010 Hb_000523_080--Hb_128548_010 Hb_000523_080--Hb_003943_020 Hb_007929_080 Hb_007929_080 Hb_000523_080--Hb_007929_080 Hb_000523_080--Hb_009771_110 Hb_000523_080--Hb_001723_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.76884 8.15077 12.4678 7.58599 7.92942 8.89907
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.02518 5.37437 3.16043 9.62078 11.2932

CAGE analysis