Hb_128548_010

Information

Type -
Description -
Location Contig128548: 4261-12349
Sequence    

Annotation

kegg
ID rcu:RCOM_1192130
description hypothetical protein
nr
ID XP_002520368.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9S2Z9
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1192130 PE=4 SV=1
Gene Ontology
ID GO:0009505
description pleckstrin homology domain-containing family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08717: 4381-12296
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_128548_010 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000523_080 0.0456639289 - - PREDICTED: LOW QUALITY PROTEIN: beta-catenin-like protein 1 [Jatropha curcas]
3 Hb_001430_080 0.0630402797 - - PREDICTED: putative mediator of RNA polymerase II transcription subunit 26 [Jatropha curcas]
4 Hb_001723_140 0.06435936 - - PREDICTED: importin beta-like SAD2 homolog isoform X2 [Jatropha curcas]
5 Hb_008568_020 0.0648944842 - - PREDICTED: uncharacterized protein LOC105122325 isoform X3 [Populus euphratica]
6 Hb_003943_020 0.0652288746 - - PREDICTED: peptidyl-prolyl cis-trans isomerase PASTICCINO1 isoform X1 [Jatropha curcas]
7 Hb_001584_350 0.0662259953 - - hypothetical protein JCGZ_23178 [Jatropha curcas]
8 Hb_000086_500 0.0676323044 transcription factor TF Family: G2-like transcription factor, putative [Ricinus communis]
9 Hb_005289_040 0.0681417101 - - poly(A) polymerase, putative [Ricinus communis]
10 Hb_000457_230 0.0692942933 - - PREDICTED: ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic [Jatropha curcas]
11 Hb_013394_030 0.0696869305 - - PREDICTED: exocyst complex component SEC6 [Vitis vinifera]
12 Hb_002067_030 0.070142529 - - PREDICTED: poly(ADP-ribose) glycohydrolase 1-like isoform X2 [Jatropha curcas]
13 Hb_000398_080 0.0727500506 - - tip120, putative [Ricinus communis]
14 Hb_003186_020 0.0734924155 - - PREDICTED: histone deacetylase 15 isoform X1 [Jatropha curcas]
15 Hb_154580_010 0.073583112 - - hypothetical protein PRUPE_ppa002109mg [Prunus persica]
16 Hb_011972_020 0.0743886878 - - protein binding protein, putative [Ricinus communis]
17 Hb_000879_040 0.0744518009 - - PREDICTED: calcium-transporting ATPase 3, endoplasmic reticulum-type [Jatropha curcas]
18 Hb_007044_110 0.0747225095 - - nucleic acid binding protein, putative [Ricinus communis]
19 Hb_001171_030 0.0760763238 transcription factor TF Family: LUG PREDICTED: transcriptional corepressor LEUNIG-like [Jatropha curcas]
20 Hb_000134_270 0.0766970668 - - arginine/serine rich splicing factor sf4/14, putative [Ricinus communis]

Gene co-expression network

sample Hb_128548_010 Hb_128548_010 Hb_000523_080 Hb_000523_080 Hb_128548_010--Hb_000523_080 Hb_001430_080 Hb_001430_080 Hb_128548_010--Hb_001430_080 Hb_001723_140 Hb_001723_140 Hb_128548_010--Hb_001723_140 Hb_008568_020 Hb_008568_020 Hb_128548_010--Hb_008568_020 Hb_003943_020 Hb_003943_020 Hb_128548_010--Hb_003943_020 Hb_001584_350 Hb_001584_350 Hb_128548_010--Hb_001584_350 Hb_000523_080--Hb_003943_020 Hb_007929_080 Hb_007929_080 Hb_000523_080--Hb_007929_080 Hb_009771_110 Hb_009771_110 Hb_000523_080--Hb_009771_110 Hb_000523_080--Hb_001723_140 Hb_013358_070 Hb_013358_070 Hb_000523_080--Hb_013358_070 Hb_000011_100 Hb_000011_100 Hb_001430_080--Hb_000011_100 Hb_001277_020 Hb_001277_020 Hb_001430_080--Hb_001277_020 Hb_004976_010 Hb_004976_010 Hb_001430_080--Hb_004976_010 Hb_000645_170 Hb_000645_170 Hb_001430_080--Hb_000645_170 Hb_003835_070 Hb_003835_070 Hb_001430_080--Hb_003835_070 Hb_000879_040 Hb_000879_040 Hb_001430_080--Hb_000879_040 Hb_001171_030 Hb_001171_030 Hb_001723_140--Hb_001171_030 Hb_001723_140--Hb_013358_070 Hb_001723_140--Hb_001584_350 Hb_003142_040 Hb_003142_040 Hb_001723_140--Hb_003142_040 Hb_000027_050 Hb_000027_050 Hb_001723_140--Hb_000027_050 Hb_000529_060 Hb_000529_060 Hb_001723_140--Hb_000529_060 Hb_003096_060 Hb_003096_060 Hb_008568_020--Hb_003096_060 Hb_001635_040 Hb_001635_040 Hb_008568_020--Hb_001635_040 Hb_154580_010 Hb_154580_010 Hb_008568_020--Hb_154580_010 Hb_000836_410 Hb_000836_410 Hb_008568_020--Hb_000836_410 Hb_008568_020--Hb_000645_170 Hb_002615_120 Hb_002615_120 Hb_008568_020--Hb_002615_120 Hb_000318_120 Hb_000318_120 Hb_003943_020--Hb_000318_120 Hb_005333_160 Hb_005333_160 Hb_003943_020--Hb_005333_160 Hb_003943_020--Hb_013358_070 Hb_003943_020--Hb_001723_140 Hb_001584_350--Hb_000529_060 Hb_001584_350--Hb_001171_030 Hb_000174_150 Hb_000174_150 Hb_001584_350--Hb_000174_150 Hb_000977_300 Hb_000977_300 Hb_001584_350--Hb_000977_300
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
26.0759 27.4676 34.4892 17.7837 22.8317 21.8085
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.3797 11.866 11.7943 26.8683 20.5179

CAGE analysis