Hb_000027_050

Information

Type -
Description -
Location Contig27: 33681-40885
Sequence    

Annotation

kegg
ID rcu:RCOM_1311110
description hypothetical protein
nr
ID XP_012075732.1
description PREDICTED: uncharacterized protein LOC105636933 isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KRW6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09323 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28114: 39576-40875
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000027_050 0.0 - - PREDICTED: uncharacterized protein LOC105636933 isoform X1 [Jatropha curcas]
2 Hb_000879_040 0.061374309 - - PREDICTED: calcium-transporting ATPase 3, endoplasmic reticulum-type [Jatropha curcas]
3 Hb_001723_140 0.0624918338 - - PREDICTED: importin beta-like SAD2 homolog isoform X2 [Jatropha curcas]
4 Hb_003943_010 0.0654659108 - - conserved hypothetical protein [Ricinus communis]
5 Hb_001935_160 0.0727902397 - - PREDICTED: F-box protein At5g51370-like [Jatropha curcas]
6 Hb_000252_050 0.0731858837 - - PREDICTED: pentatricopeptide repeat-containing protein At1g60770 [Jatropha curcas]
7 Hb_001268_280 0.0751120976 - - conserved hypothetical protein [Ricinus communis]
8 Hb_013358_070 0.0755279524 - - protein with unknown function [Ricinus communis]
9 Hb_000786_040 0.0763250113 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 17 [Jatropha curcas]
10 Hb_008103_020 0.0770811416 - - hypothetical protein POPTR_0003s20310g [Populus trichocarpa]
11 Hb_001584_350 0.0778839113 - - hypothetical protein JCGZ_23178 [Jatropha curcas]
12 Hb_021374_010 0.0786499263 transcription factor TF Family: NAC PREDICTED: NAC transcription factor NAM-A1 [Populus euphratica]
13 Hb_000398_080 0.0799099315 - - tip120, putative [Ricinus communis]
14 Hb_008062_050 0.0807255224 - - PREDICTED: uncharacterized protein LOC105631631 [Jatropha curcas]
15 Hb_003124_160 0.0810331041 - - dynamin, putative [Ricinus communis]
16 Hb_028872_070 0.0815326305 desease resistance Gene Name: DEAD PREDICTED: putative pre-mRNA-splicing factor ATP-dependent RNA helicase PRP1 isoform X1 [Jatropha curcas]
17 Hb_098209_010 0.0821317414 - - ATP synthase subunit beta vacuolar, putative [Ricinus communis]
18 Hb_160459_040 0.0822237649 - - hypothetical protein JCGZ_01511 [Jatropha curcas]
19 Hb_001318_070 0.0839853166 transcription factor TF Family: SBP conserved hypothetical protein [Ricinus communis]
20 Hb_005402_040 0.0842538571 - - PREDICTED: replication factor C subunit 1 [Jatropha curcas]

Gene co-expression network

sample Hb_000027_050 Hb_000027_050 Hb_000879_040 Hb_000879_040 Hb_000027_050--Hb_000879_040 Hb_001723_140 Hb_001723_140 Hb_000027_050--Hb_001723_140 Hb_003943_010 Hb_003943_010 Hb_000027_050--Hb_003943_010 Hb_001935_160 Hb_001935_160 Hb_000027_050--Hb_001935_160 Hb_000252_050 Hb_000252_050 Hb_000027_050--Hb_000252_050 Hb_001268_280 Hb_001268_280 Hb_000027_050--Hb_001268_280 Hb_001318_070 Hb_001318_070 Hb_000879_040--Hb_001318_070 Hb_000243_210 Hb_000243_210 Hb_000879_040--Hb_000243_210 Hb_012055_110 Hb_012055_110 Hb_000879_040--Hb_012055_110 Hb_000099_040 Hb_000099_040 Hb_000879_040--Hb_000099_040 Hb_001430_080 Hb_001430_080 Hb_000879_040--Hb_001430_080 Hb_001171_030 Hb_001171_030 Hb_001723_140--Hb_001171_030 Hb_013358_070 Hb_013358_070 Hb_001723_140--Hb_013358_070 Hb_001584_350 Hb_001584_350 Hb_001723_140--Hb_001584_350 Hb_003142_040 Hb_003142_040 Hb_001723_140--Hb_003142_040 Hb_000529_060 Hb_000529_060 Hb_001723_140--Hb_000529_060 Hb_001377_160 Hb_001377_160 Hb_003943_010--Hb_001377_160 Hb_001946_340 Hb_001946_340 Hb_003943_010--Hb_001946_340 Hb_000227_220 Hb_000227_220 Hb_003943_010--Hb_000227_220 Hb_000398_080 Hb_000398_080 Hb_003943_010--Hb_000398_080 Hb_003943_010--Hb_000879_040 Hb_159558_010 Hb_159558_010 Hb_003943_010--Hb_159558_010 Hb_000941_030 Hb_000941_030 Hb_001935_160--Hb_000941_030 Hb_001935_160--Hb_012055_110 Hb_002475_040 Hb_002475_040 Hb_001935_160--Hb_002475_040 Hb_000066_150 Hb_000066_150 Hb_001935_160--Hb_000066_150 Hb_001935_160--Hb_000879_040 Hb_021374_010 Hb_021374_010 Hb_000252_050--Hb_021374_010 Hb_000252_050--Hb_000227_220 Hb_011231_020 Hb_011231_020 Hb_000252_050--Hb_011231_020 Hb_012760_100 Hb_012760_100 Hb_000252_050--Hb_012760_100 Hb_000252_050--Hb_003943_010 Hb_000914_120 Hb_000914_120 Hb_001268_280--Hb_000914_120 Hb_002267_140 Hb_002267_140 Hb_001268_280--Hb_002267_140 Hb_000162_030 Hb_000162_030 Hb_001268_280--Hb_000162_030 Hb_001268_280--Hb_001318_070 Hb_002732_040 Hb_002732_040 Hb_001268_280--Hb_002732_040 Hb_001268_280--Hb_000243_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
30.6182 41.292 31.4374 26.7101 23.3248 39.13
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
19.5571 11.7905 13.8971 33.2103 34.3305

CAGE analysis