Hb_001584_350

Information

Type -
Description -
Location Contig1584: 205827-210382
Sequence    

Annotation

kegg
ID rcu:RCOM_1436360
description nucleic acid binding protein, putative
nr
ID KDP23345.1
description hypothetical protein JCGZ_23178 [Jatropha curcas]
swissprot
ID Q76PD2
description E3 ubiquitin-protein ligase hel2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC1223.01 PE=1 SV=2
trembl
ID A0A067JTM0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23178 PE=4 SV=1
Gene Ontology
ID GO:0008270
description ring u-box superfamily isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14006: 205793-207324 , PASA_asmbl_14007: 207428-208083 , PASA_asmbl_14008: 208344-209059 , PASA_asmbl_14009: 208349-208489 , PASA_asmbl_14010: 209083-209262
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001584_350 0.0 - - hypothetical protein JCGZ_23178 [Jatropha curcas]
2 Hb_001723_140 0.0566235143 - - PREDICTED: importin beta-like SAD2 homolog isoform X2 [Jatropha curcas]
3 Hb_000529_060 0.0591144296 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 17 isoform X1 [Jatropha curcas]
4 Hb_001171_030 0.0608653646 transcription factor TF Family: LUG PREDICTED: transcriptional corepressor LEUNIG-like [Jatropha curcas]
5 Hb_000174_150 0.0657182654 - - stearoyl-acyl-carrier protein desaturase [Ricinus communis]
6 Hb_128548_010 0.0662259953 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000977_300 0.0666749682 - - PREDICTED: LOW QUALITY PROTEIN: probable E3 ubiquitin-protein ligase ARI8 [Malus domestica]
8 Hb_000787_150 0.0690181692 - - PREDICTED: protein NDR1-like [Jatropha curcas]
9 Hb_004724_370 0.0698427737 - - PREDICTED: mRNA-decapping enzyme-like protein [Jatropha curcas]
10 Hb_001674_040 0.0715259864 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 23 [Jatropha curcas]
11 Hb_002045_250 0.0742996749 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP63 isoform X3 [Jatropha curcas]
12 Hb_000086_500 0.0748403537 transcription factor TF Family: G2-like transcription factor, putative [Ricinus communis]
13 Hb_003912_040 0.0754433639 - - hypothetical protein CISIN_1g005153mg [Citrus sinensis]
14 Hb_000879_040 0.0759050467 - - PREDICTED: calcium-transporting ATPase 3, endoplasmic reticulum-type [Jatropha curcas]
15 Hb_000116_030 0.0765839724 - - PREDICTED: protein GRIP [Jatropha curcas]
16 Hb_031641_010 0.0772249398 - - conserved hypothetical protein [Ricinus communis]
17 Hb_003142_040 0.07766697 - - Sf3a3 [Gossypium arboreum]
18 Hb_002811_040 0.0778445467 - - 5'->3' exoribonuclease, putative [Ricinus communis]
19 Hb_000340_030 0.0778605898 - - PREDICTED: myosin heavy chain, non-muscle-like [Jatropha curcas]
20 Hb_000027_050 0.0778839113 - - PREDICTED: uncharacterized protein LOC105636933 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001584_350 Hb_001584_350 Hb_001723_140 Hb_001723_140 Hb_001584_350--Hb_001723_140 Hb_000529_060 Hb_000529_060 Hb_001584_350--Hb_000529_060 Hb_001171_030 Hb_001171_030 Hb_001584_350--Hb_001171_030 Hb_000174_150 Hb_000174_150 Hb_001584_350--Hb_000174_150 Hb_128548_010 Hb_128548_010 Hb_001584_350--Hb_128548_010 Hb_000977_300 Hb_000977_300 Hb_001584_350--Hb_000977_300 Hb_001723_140--Hb_001171_030 Hb_013358_070 Hb_013358_070 Hb_001723_140--Hb_013358_070 Hb_003142_040 Hb_003142_040 Hb_001723_140--Hb_003142_040 Hb_000027_050 Hb_000027_050 Hb_001723_140--Hb_000027_050 Hb_001723_140--Hb_000529_060 Hb_000529_060--Hb_000977_300 Hb_000996_020 Hb_000996_020 Hb_000529_060--Hb_000996_020 Hb_000046_600 Hb_000046_600 Hb_000529_060--Hb_000046_600 Hb_005333_140 Hb_005333_140 Hb_000529_060--Hb_005333_140 Hb_011972_020 Hb_011972_020 Hb_000529_060--Hb_011972_020 Hb_000529_060--Hb_001171_030 Hb_001171_030--Hb_003142_040 Hb_002968_070 Hb_002968_070 Hb_001171_030--Hb_002968_070 Hb_000189_630 Hb_000189_630 Hb_001171_030--Hb_000189_630 Hb_001171_030--Hb_000977_300 Hb_000174_150--Hb_000977_300 Hb_000139_320 Hb_000139_320 Hb_000174_150--Hb_000139_320 Hb_005288_140 Hb_005288_140 Hb_000174_150--Hb_005288_140 Hb_000174_150--Hb_001171_030 Hb_000340_030 Hb_000340_030 Hb_000174_150--Hb_000340_030 Hb_000523_080 Hb_000523_080 Hb_128548_010--Hb_000523_080 Hb_001430_080 Hb_001430_080 Hb_128548_010--Hb_001430_080 Hb_128548_010--Hb_001723_140 Hb_008568_020 Hb_008568_020 Hb_128548_010--Hb_008568_020 Hb_003943_020 Hb_003943_020 Hb_128548_010--Hb_003943_020 Hb_004517_020 Hb_004517_020 Hb_000977_300--Hb_004517_020 Hb_000120_910 Hb_000120_910 Hb_000977_300--Hb_000120_910 Hb_000977_300--Hb_000189_630 Hb_000110_350 Hb_000110_350 Hb_000977_300--Hb_000110_350
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.92801 9.36951 9.05776 6.95989 4.87561 6.26534
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.1014 3.20318 2.68969 7.64951 5.68908

CAGE analysis