Hb_013358_070

Information

Type -
Description -
Location Contig13358: 90070-98369
Sequence    

Annotation

kegg
ID rcu:RCOM_0921590
description protein with unknown function (EC:2.7.11.7)
nr
ID XP_002515435.1
description protein with unknown function [Ricinus communis]
swissprot
ID Q6S7B0
description Transcription initiation factor TFIID subunit 5 OS=Arabidopsis thaliana GN=TAF5 PE=1 SV=1
trembl
ID B9RNW6
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0921590 PE=4 SV=1
Gene Ontology
ID GO:0005634
description transcription initiation factor tfiid subunit 5

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_013358_070 0.0 - - protein with unknown function [Ricinus communis]
2 Hb_001723_140 0.0521294957 - - PREDICTED: importin beta-like SAD2 homolog isoform X2 [Jatropha curcas]
3 Hb_000523_080 0.0653833793 - - PREDICTED: LOW QUALITY PROTEIN: beta-catenin-like protein 1 [Jatropha curcas]
4 Hb_000175_410 0.0662859488 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 56-like isoform X2 [Jatropha curcas]
5 Hb_003943_020 0.0675966655 - - PREDICTED: peptidyl-prolyl cis-trans isomerase PASTICCINO1 isoform X1 [Jatropha curcas]
6 Hb_009771_110 0.0733492616 - - PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 2 [Jatropha curcas]
7 Hb_000318_120 0.0738424376 transcription factor TF Family: SWI/SNF-BAF60b PREDICTED: DNA ligase 1 isoform X2 [Jatropha curcas]
8 Hb_007044_110 0.075436544 - - nucleic acid binding protein, putative [Ricinus communis]
9 Hb_000027_050 0.0755279524 - - PREDICTED: uncharacterized protein LOC105636933 isoform X1 [Jatropha curcas]
10 Hb_055235_020 0.0765392706 - - PREDICTED: probable mitochondrial saccharopine dehydrogenase-like oxidoreductase At5g39410 isoform X1 [Jatropha curcas]
11 Hb_098209_010 0.0783380775 - - ATP synthase subunit beta vacuolar, putative [Ricinus communis]
12 Hb_000879_040 0.0795175479 - - PREDICTED: calcium-transporting ATPase 3, endoplasmic reticulum-type [Jatropha curcas]
13 Hb_000011_270 0.0798008882 - - PREDICTED: pumilio homolog 23 [Jatropha curcas]
14 Hb_000377_050 0.0804533601 - - PREDICTED: sister chromatid cohesion protein PDS5 homolog A isoform X1 [Jatropha curcas]
15 Hb_128548_010 0.0815757887 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000661_120 0.0820730023 - - cap binding protein, putative [Ricinus communis]
17 Hb_000457_230 0.0821315318 - - PREDICTED: ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic [Jatropha curcas]
18 Hb_006618_090 0.0828442052 - - PREDICTED: FAM10 family protein At4g22670 [Jatropha curcas]
19 Hb_000398_080 0.0830073211 - - tip120, putative [Ricinus communis]
20 Hb_001085_110 0.083118041 - - T6D22.2 [Arabidopsis thaliana]

Gene co-expression network

sample Hb_013358_070 Hb_013358_070 Hb_001723_140 Hb_001723_140 Hb_013358_070--Hb_001723_140 Hb_000523_080 Hb_000523_080 Hb_013358_070--Hb_000523_080 Hb_000175_410 Hb_000175_410 Hb_013358_070--Hb_000175_410 Hb_003943_020 Hb_003943_020 Hb_013358_070--Hb_003943_020 Hb_009771_110 Hb_009771_110 Hb_013358_070--Hb_009771_110 Hb_000318_120 Hb_000318_120 Hb_013358_070--Hb_000318_120 Hb_001171_030 Hb_001171_030 Hb_001723_140--Hb_001171_030 Hb_001584_350 Hb_001584_350 Hb_001723_140--Hb_001584_350 Hb_003142_040 Hb_003142_040 Hb_001723_140--Hb_003142_040 Hb_000027_050 Hb_000027_050 Hb_001723_140--Hb_000027_050 Hb_000529_060 Hb_000529_060 Hb_001723_140--Hb_000529_060 Hb_128548_010 Hb_128548_010 Hb_000523_080--Hb_128548_010 Hb_000523_080--Hb_003943_020 Hb_007929_080 Hb_007929_080 Hb_000523_080--Hb_007929_080 Hb_000523_080--Hb_009771_110 Hb_000523_080--Hb_001723_140 Hb_003186_020 Hb_003186_020 Hb_000175_410--Hb_003186_020 Hb_003093_040 Hb_003093_040 Hb_000175_410--Hb_003093_040 Hb_031284_010 Hb_031284_010 Hb_000175_410--Hb_031284_010 Hb_000011_270 Hb_000011_270 Hb_000175_410--Hb_000011_270 Hb_000175_410--Hb_000523_080 Hb_003943_020--Hb_000318_120 Hb_003943_020--Hb_128548_010 Hb_005333_160 Hb_005333_160 Hb_003943_020--Hb_005333_160 Hb_003943_020--Hb_001723_140 Hb_006618_090 Hb_006618_090 Hb_009771_110--Hb_006618_090 Hb_005053_010 Hb_005053_010 Hb_009771_110--Hb_005053_010 Hb_160459_040 Hb_160459_040 Hb_009771_110--Hb_160459_040 Hb_009771_110--Hb_007929_080 Hb_002571_030 Hb_002571_030 Hb_009771_110--Hb_002571_030 Hb_055235_020 Hb_055235_020 Hb_000318_120--Hb_055235_020 Hb_000134_270 Hb_000134_270 Hb_000318_120--Hb_000134_270 Hb_000318_120--Hb_000523_080 Hb_007044_110 Hb_007044_110 Hb_000318_120--Hb_007044_110 Hb_000563_420 Hb_000563_420 Hb_000318_120--Hb_000563_420
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.06071 7.78643 8.10169 4.92561 6.07114 6.99111
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.26051 2.80289 1.69414 6.91689 7.01987

CAGE analysis