Hb_005053_010

Information

Type -
Description -
Location Contig5053: 10853-16098
Sequence    

Annotation

kegg
ID rcu:RCOM_0851840
description serine endopeptidase degp2, putative (EC:1.3.1.74)
nr
ID XP_012081992.1
description PREDICTED: protease Do-like 9 [Jatropha curcas]
swissprot
ID Q9FL12
description Protease Do-like 9 OS=Arabidopsis thaliana GN=DEGP9 PE=1 SV=1
trembl
ID A0A067LLW5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09643 PE=4 SV=1
Gene Ontology
ID GO:0004252
description protease do-like 9

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46040: 10988-16163
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005053_010 0.0 - - PREDICTED: protease Do-like 9 [Jatropha curcas]
2 Hb_160459_040 0.0469732987 - - hypothetical protein JCGZ_01511 [Jatropha curcas]
3 Hb_009771_110 0.0480623557 - - PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 2 [Jatropha curcas]
4 Hb_006618_090 0.0595082856 - - PREDICTED: FAM10 family protein At4g22670 [Jatropha curcas]
5 Hb_001504_040 0.0709236736 - - PREDICTED: factor of DNA methylation 1-like [Jatropha curcas]
6 Hb_007929_080 0.0727713736 - - PREDICTED: transforming growth factor-beta receptor-associated protein 1 [Jatropha curcas]
7 Hb_003104_040 0.0734592555 - - PREDICTED: insulin-degrading enzyme isoform X1 [Jatropha curcas]
8 Hb_001369_040 0.0764832705 - - PREDICTED: probable isoaspartyl peptidase/L-asparaginase 3 isoform X1 [Jatropha curcas]
9 Hb_000960_050 0.0768928016 - - PREDICTED: protein EXPORTIN 1A [Jatropha curcas]
10 Hb_001301_220 0.0769075888 - - PREDICTED: polyadenylate-binding protein-interacting protein 4 [Jatropha curcas]
11 Hb_001427_190 0.0794782372 - - PREDICTED: histone acetyltransferase type B catalytic subunit [Jatropha curcas]
12 Hb_002092_100 0.0795145886 - - PREDICTED: actin-related protein 4-like [Jatropha curcas]
13 Hb_001377_110 0.0801054393 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 31-like [Jatropha curcas]
14 Hb_011930_080 0.0812726928 - - PREDICTED: uncharacterized protein LOC105649790 [Jatropha curcas]
15 Hb_001935_110 0.081367074 - - PREDICTED: T-complex protein 1 subunit alpha [Jatropha curcas]
16 Hb_000086_560 0.0829861247 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase SUVR2 isoform X2 [Jatropha curcas]
17 Hb_000152_260 0.0831762351 - - PREDICTED: cleavage and polyadenylation specificity factor subunit 1 [Jatropha curcas]
18 Hb_012053_080 0.0838227022 - - AP-2 complex subunit alpha, putative [Ricinus communis]
19 Hb_143629_150 0.0839471625 - - PREDICTED: flap endonuclease 1 isoform X2 [Prunus mume]
20 Hb_000523_080 0.0843486801 - - PREDICTED: LOW QUALITY PROTEIN: beta-catenin-like protein 1 [Jatropha curcas]

Gene co-expression network

sample Hb_005053_010 Hb_005053_010 Hb_160459_040 Hb_160459_040 Hb_005053_010--Hb_160459_040 Hb_009771_110 Hb_009771_110 Hb_005053_010--Hb_009771_110 Hb_006618_090 Hb_006618_090 Hb_005053_010--Hb_006618_090 Hb_001504_040 Hb_001504_040 Hb_005053_010--Hb_001504_040 Hb_007929_080 Hb_007929_080 Hb_005053_010--Hb_007929_080 Hb_003104_040 Hb_003104_040 Hb_005053_010--Hb_003104_040 Hb_160459_040--Hb_009771_110 Hb_012053_080 Hb_012053_080 Hb_160459_040--Hb_012053_080 Hb_000261_030 Hb_000261_030 Hb_160459_040--Hb_000261_030 Hb_002631_140 Hb_002631_140 Hb_160459_040--Hb_002631_140 Hb_028872_070 Hb_028872_070 Hb_160459_040--Hb_028872_070 Hb_009771_110--Hb_006618_090 Hb_009771_110--Hb_007929_080 Hb_002571_030 Hb_002571_030 Hb_009771_110--Hb_002571_030 Hb_000523_080 Hb_000523_080 Hb_009771_110--Hb_000523_080 Hb_002686_040 Hb_002686_040 Hb_006618_090--Hb_002686_040 Hb_006618_090--Hb_007929_080 Hb_006618_090--Hb_000523_080 Hb_006618_090--Hb_000261_030 Hb_001369_040 Hb_001369_040 Hb_001504_040--Hb_001369_040 Hb_009296_010 Hb_009296_010 Hb_001504_040--Hb_009296_010 Hb_000035_410 Hb_000035_410 Hb_001504_040--Hb_000035_410 Hb_012490_060 Hb_012490_060 Hb_001504_040--Hb_012490_060 Hb_001504_040--Hb_160459_040 Hb_007929_080--Hb_002571_030 Hb_007929_080--Hb_000523_080 Hb_001405_190 Hb_001405_190 Hb_007929_080--Hb_001405_190 Hb_001377_110 Hb_001377_110 Hb_007929_080--Hb_001377_110 Hb_073973_150 Hb_073973_150 Hb_003104_040--Hb_073973_150 Hb_012215_010 Hb_012215_010 Hb_003104_040--Hb_012215_010 Hb_010272_010 Hb_010272_010 Hb_003104_040--Hb_010272_010 Hb_000640_070 Hb_000640_070 Hb_003104_040--Hb_000640_070 Hb_002539_110 Hb_002539_110 Hb_003104_040--Hb_002539_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
20.285 20.2721 26.7724 16.7349 30.3643 30.6172
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.4278 7.24468 8.2194 19.4374 20.0718

CAGE analysis