Hb_001369_040

Information

Type -
Description -
Location Contig1369: 40309-43381
Sequence    

Annotation

kegg
ID rcu:RCOM_1501020
description n(4)-(beta-n-acetylglucosaminyl)-l-asparaginase, putative (EC:3.5.1.26)
nr
ID XP_012090482.1
description PREDICTED: probable isoaspartyl peptidase/L-asparaginase 3 isoform X1 [Jatropha curcas]
swissprot
ID Q56W64
description Probable isoaspartyl peptidase/L-asparaginase 3 OS=Arabidopsis thaliana GN=At5g61540 PE=2 SV=1
trembl
ID A0A067JR18
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26286 PE=4 SV=1
Gene Ontology
ID GO:0003948
description probable isoaspartyl peptidase l-asparaginase 3 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10134: 40310-42251
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001369_040 0.0 - - PREDICTED: probable isoaspartyl peptidase/L-asparaginase 3 isoform X1 [Jatropha curcas]
2 Hb_001504_040 0.0539802422 - - PREDICTED: factor of DNA methylation 1-like [Jatropha curcas]
3 Hb_001935_110 0.0754081828 - - PREDICTED: T-complex protein 1 subunit alpha [Jatropha curcas]
4 Hb_005053_010 0.0764832705 - - PREDICTED: protease Do-like 9 [Jatropha curcas]
5 Hb_001427_190 0.078007415 - - PREDICTED: histone acetyltransferase type B catalytic subunit [Jatropha curcas]
6 Hb_002078_100 0.0826335598 - - PREDICTED: mannosyl-oligosaccharide glucosidase GCS1-like [Jatropha curcas]
7 Hb_009296_010 0.082883858 - - PREDICTED: eukaryotic peptide chain release factor GTP-binding subunit ERF3A isoform X3 [Jatropha curcas]
8 Hb_006445_010 0.0877706064 - - PREDICTED: uncharacterized protein LOC105640147 [Jatropha curcas]
9 Hb_002888_070 0.0879943554 - - PREDICTED: tubulin-folding cofactor E isoform X1 [Pyrus x bretschneideri]
10 Hb_160459_040 0.0880767306 - - hypothetical protein JCGZ_01511 [Jatropha curcas]
11 Hb_011930_080 0.0894411367 - - PREDICTED: uncharacterized protein LOC105649790 [Jatropha curcas]
12 Hb_028308_010 0.090508437 - - PREDICTED: probable protein S-acyltransferase 4 isoform X1 [Jatropha curcas]
13 Hb_002749_110 0.0915192323 - - PREDICTED: uncharacterized protein LOC105636001 isoform X1 [Jatropha curcas]
14 Hb_000544_010 0.0930872902 - - PREDICTED: GPI mannosyltransferase 1 [Jatropha curcas]
15 Hb_012053_080 0.0932545708 - - AP-2 complex subunit alpha, putative [Ricinus communis]
16 Hb_000333_060 0.0941079737 - - PREDICTED: F-box/LRR-repeat protein 4 [Jatropha curcas]
17 Hb_003104_040 0.0975441127 - - PREDICTED: insulin-degrading enzyme isoform X1 [Jatropha curcas]
18 Hb_003739_030 0.0993550731 - - PREDICTED: putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [Jatropha curcas]
19 Hb_001473_090 0.0997334884 - - PREDICTED: uncharacterized protein LOC105650374 [Jatropha curcas]
20 Hb_000152_260 0.1002181109 - - PREDICTED: cleavage and polyadenylation specificity factor subunit 1 [Jatropha curcas]

Gene co-expression network

sample Hb_001369_040 Hb_001369_040 Hb_001504_040 Hb_001504_040 Hb_001369_040--Hb_001504_040 Hb_001935_110 Hb_001935_110 Hb_001369_040--Hb_001935_110 Hb_005053_010 Hb_005053_010 Hb_001369_040--Hb_005053_010 Hb_001427_190 Hb_001427_190 Hb_001369_040--Hb_001427_190 Hb_002078_100 Hb_002078_100 Hb_001369_040--Hb_002078_100 Hb_009296_010 Hb_009296_010 Hb_001369_040--Hb_009296_010 Hb_001504_040--Hb_005053_010 Hb_001504_040--Hb_009296_010 Hb_000035_410 Hb_000035_410 Hb_001504_040--Hb_000035_410 Hb_012490_060 Hb_012490_060 Hb_001504_040--Hb_012490_060 Hb_160459_040 Hb_160459_040 Hb_001504_040--Hb_160459_040 Hb_012053_080 Hb_012053_080 Hb_001935_110--Hb_012053_080 Hb_019654_040 Hb_019654_040 Hb_001935_110--Hb_019654_040 Hb_001935_110--Hb_001427_190 Hb_000333_060 Hb_000333_060 Hb_001935_110--Hb_000333_060 Hb_000470_070 Hb_000470_070 Hb_001935_110--Hb_000470_070 Hb_001935_110--Hb_002078_100 Hb_005053_010--Hb_160459_040 Hb_009771_110 Hb_009771_110 Hb_005053_010--Hb_009771_110 Hb_006618_090 Hb_006618_090 Hb_005053_010--Hb_006618_090 Hb_007929_080 Hb_007929_080 Hb_005053_010--Hb_007929_080 Hb_003104_040 Hb_003104_040 Hb_005053_010--Hb_003104_040 Hb_011930_080 Hb_011930_080 Hb_001427_190--Hb_011930_080 Hb_000152_260 Hb_000152_260 Hb_001427_190--Hb_000152_260 Hb_001427_190--Hb_019654_040 Hb_001427_190--Hb_002078_100 Hb_002888_070 Hb_002888_070 Hb_001427_190--Hb_002888_070 Hb_002078_100--Hb_000470_070 Hb_002078_100--Hb_009296_010 Hb_000648_100 Hb_000648_100 Hb_002078_100--Hb_000648_100 Hb_174821_010 Hb_174821_010 Hb_002078_100--Hb_174821_010 Hb_000109_100 Hb_000109_100 Hb_002078_100--Hb_000109_100 Hb_002078_100--Hb_019654_040 Hb_009296_010--Hb_000470_070 Hb_009296_010--Hb_019654_040 Hb_027380_140 Hb_027380_140 Hb_009296_010--Hb_027380_140 Hb_009296_010--Hb_012053_080 Hb_009296_010--Hb_001935_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
16.616 10.3968 14.7869 10.8442 25.9427 22.4792
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.3101 3.56634 6.44764 15.1617 14.5309

CAGE analysis