Hb_006618_090

Information

Type -
Description -
Location Contig6618: 72365-80066
Sequence    

Annotation

kegg
ID mus:103983029
description FAM10 family protein At4g22670-like
nr
ID XP_012087117.1
description PREDICTED: FAM10 family protein At4g22670 [Jatropha curcas]
swissprot
ID Q8VWG7
description TPR repeat-containing thioredoxin TDX OS=Arabidopsis thaliana GN=TDX PE=1 SV=1
trembl
ID A0A067JRZ5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20769 PE=4 SV=1
Gene Ontology
ID GO:0005829
description fam10 family protein at4g22670-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53063: 69056-71430 , PASA_asmbl_53064: 72415-80064
cDNA
(Sanger)
(ID:Location)		 007_M17.ab1: 69062-71429

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006618_090 0.0 - - PREDICTED: FAM10 family protein At4g22670 [Jatropha curcas]
2 Hb_009771_110 0.0459966959 - - PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 2 [Jatropha curcas]
3 Hb_005053_010 0.0595082856 - - PREDICTED: protease Do-like 9 [Jatropha curcas]
4 Hb_002686_040 0.0607992219 - - PREDICTED: T-complex protein 1 subunit theta [Jatropha curcas]
5 Hb_007929_080 0.0676909571 - - PREDICTED: transforming growth factor-beta receptor-associated protein 1 [Jatropha curcas]
6 Hb_000523_080 0.069395013 - - PREDICTED: LOW QUALITY PROTEIN: beta-catenin-like protein 1 [Jatropha curcas]
7 Hb_000261_030 0.0721467429 - - PREDICTED: uncharacterized protein LOC105633147 [Jatropha curcas]
8 Hb_160459_040 0.0721674481 - - hypothetical protein JCGZ_01511 [Jatropha curcas]
9 Hb_000577_030 0.0726558427 - - Ubiquitin carboxyl-terminal hydrolase 12 -like protein [Gossypium arboreum]
10 Hb_000960_050 0.0757552778 - - PREDICTED: protein EXPORTIN 1A [Jatropha curcas]
11 Hb_032920_130 0.0757784009 - - PREDICTED: vacuolar-sorting receptor 3 [Jatropha curcas]
12 Hb_000917_160 0.0758281483 - - PREDICTED: protein decapping 5 isoform X1 [Jatropha curcas]
13 Hb_000184_150 0.07797362 - - PREDICTED: U-box domain-containing protein 15 [Jatropha curcas]
14 Hb_002571_030 0.0780556387 - - PREDICTED: microfibrillar-associated protein 1-like [Prunus mume]
15 Hb_001047_200 0.0784184019 - - PREDICTED: pre-mRNA-splicing factor 18 [Eucalyptus grandis]
16 Hb_001723_140 0.078639553 - - PREDICTED: importin beta-like SAD2 homolog isoform X2 [Jatropha curcas]
17 Hb_003739_030 0.0798629456 - - PREDICTED: putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [Jatropha curcas]
18 Hb_003124_160 0.082116461 - - dynamin, putative [Ricinus communis]
19 Hb_000398_080 0.0826592991 - - tip120, putative [Ricinus communis]
20 Hb_013358_070 0.0828442052 - - protein with unknown function [Ricinus communis]

Gene co-expression network

sample Hb_006618_090 Hb_006618_090 Hb_009771_110 Hb_009771_110 Hb_006618_090--Hb_009771_110 Hb_005053_010 Hb_005053_010 Hb_006618_090--Hb_005053_010 Hb_002686_040 Hb_002686_040 Hb_006618_090--Hb_002686_040 Hb_007929_080 Hb_007929_080 Hb_006618_090--Hb_007929_080 Hb_000523_080 Hb_000523_080 Hb_006618_090--Hb_000523_080 Hb_000261_030 Hb_000261_030 Hb_006618_090--Hb_000261_030 Hb_009771_110--Hb_005053_010 Hb_160459_040 Hb_160459_040 Hb_009771_110--Hb_160459_040 Hb_009771_110--Hb_007929_080 Hb_002571_030 Hb_002571_030 Hb_009771_110--Hb_002571_030 Hb_009771_110--Hb_000523_080 Hb_005053_010--Hb_160459_040 Hb_001504_040 Hb_001504_040 Hb_005053_010--Hb_001504_040 Hb_005053_010--Hb_007929_080 Hb_003104_040 Hb_003104_040 Hb_005053_010--Hb_003104_040 Hb_103747_020 Hb_103747_020 Hb_002686_040--Hb_103747_020 Hb_005723_020 Hb_005723_020 Hb_002686_040--Hb_005723_020 Hb_000174_060 Hb_000174_060 Hb_002686_040--Hb_000174_060 Hb_007894_160 Hb_007894_160 Hb_002686_040--Hb_007894_160 Hb_000398_080 Hb_000398_080 Hb_002686_040--Hb_000398_080 Hb_007929_080--Hb_002571_030 Hb_007929_080--Hb_000523_080 Hb_001405_190 Hb_001405_190 Hb_007929_080--Hb_001405_190 Hb_001377_110 Hb_001377_110 Hb_007929_080--Hb_001377_110 Hb_128548_010 Hb_128548_010 Hb_000523_080--Hb_128548_010 Hb_003943_020 Hb_003943_020 Hb_000523_080--Hb_003943_020 Hb_001723_140 Hb_001723_140 Hb_000523_080--Hb_001723_140 Hb_013358_070 Hb_013358_070 Hb_000523_080--Hb_013358_070 Hb_000740_100 Hb_000740_100 Hb_000261_030--Hb_000740_100 Hb_000035_410 Hb_000035_410 Hb_000261_030--Hb_000035_410 Hb_001235_230 Hb_001235_230 Hb_000261_030--Hb_001235_230 Hb_003124_160 Hb_003124_160 Hb_000261_030--Hb_003124_160 Hb_004453_110 Hb_004453_110 Hb_000261_030--Hb_004453_110 Hb_002329_040 Hb_002329_040 Hb_000261_030--Hb_002329_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
131.849 185.411 194.594 126.161 212.195 189.654
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
67.7525 49.1806 72.1828 175.71 135.293

CAGE analysis