Hb_000174_060

Information

Type -
Description -
Location Contig174: 89397-101176
Sequence    

Annotation

kegg
ID pop:POPTR_0010s18800g
description POPTRDRAFT_822354; zinc finger family protein
nr
ID XP_002315117.2
description zinc finger family protein [Populus trichocarpa]
swissprot
ID Q8W468
description Probable E3 ubiquitin-protein ligase ARI8 OS=Arabidopsis thaliana GN=ARI8 PE=2 SV=1
trembl
ID B9HYH6
description Zinc finger family protein OS=Populus trichocarpa GN=POPTR_0010s18800g PE=4 SV=2
Gene Ontology
ID GO:0004842
description probable e3 ubiquitin-protein ligase ari8

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16545: 89404-101120 , PASA_asmbl_16546: 90404-90568 , PASA_asmbl_16547: 93168-93397
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000174_060 0.0 - - zinc finger family protein [Populus trichocarpa]
2 Hb_004129_070 0.0389276753 - - PREDICTED: conserved oligomeric Golgi complex subunit 5 [Jatropha curcas]
3 Hb_140049_040 0.0495738648 - - PREDICTED: uncharacterized protein LOC105632012 [Jatropha curcas]
4 Hb_000243_210 0.0518726676 - - protein with unknown function [Ricinus communis]
5 Hb_001767_140 0.0535393605 - - PREDICTED: protein-tyrosine-phosphatase MKP1 [Jatropha curcas]
6 Hb_159558_010 0.0571878454 - - PREDICTED: uncharacterized protein LOC105635846 [Jatropha curcas]
7 Hb_009615_170 0.0603720097 - - PREDICTED: sphingoid long-chain bases kinase 1 isoform X1 [Jatropha curcas]
8 Hb_000398_080 0.0605706099 - - tip120, putative [Ricinus communis]
9 Hb_002205_250 0.061327576 - - PREDICTED: probable inactive serine/threonine-protein kinase scy1 isoform X1 [Jatropha curcas]
10 Hb_000230_090 0.0618370275 - - PREDICTED: WD repeat-containing protein 48 isoform X1 [Jatropha curcas]
11 Hb_002276_240 0.0622156671 - - PREDICTED: uncharacterized protein LOC105640682 [Jatropha curcas]
12 Hb_001318_070 0.0625387197 transcription factor TF Family: SBP conserved hypothetical protein [Ricinus communis]
13 Hb_000011_100 0.063067414 - - PREDICTED: uncharacterized protein C630.12 [Jatropha curcas]
14 Hb_000671_070 0.0637136156 - - PREDICTED: uncharacterized protein LOC105630621 [Jatropha curcas]
15 Hb_000914_120 0.0639052982 - - PREDICTED: outer envelope protein 80, chloroplastic [Jatropha curcas]
16 Hb_004884_150 0.0651616899 - - PREDICTED: ubiquitin-activating enzyme E1 1-like [Jatropha curcas]
17 Hb_006615_120 0.0657119167 - - PREDICTED: uncharacterized protein LOC105640682 [Jatropha curcas]
18 Hb_000960_050 0.0662240316 - - PREDICTED: protein EXPORTIN 1A [Jatropha curcas]
19 Hb_000949_020 0.0667205132 transcription factor TF Family: Orphans PREDICTED: ethylene receptor isoform X2 [Jatropha curcas]
20 Hb_012395_140 0.0669955392 - - PREDICTED: uncharacterized protein LOC105638411 [Jatropha curcas]

Gene co-expression network

sample Hb_000174_060 Hb_000174_060 Hb_004129_070 Hb_004129_070 Hb_000174_060--Hb_004129_070 Hb_140049_040 Hb_140049_040 Hb_000174_060--Hb_140049_040 Hb_000243_210 Hb_000243_210 Hb_000174_060--Hb_000243_210 Hb_001767_140 Hb_001767_140 Hb_000174_060--Hb_001767_140 Hb_159558_010 Hb_159558_010 Hb_000174_060--Hb_159558_010 Hb_009615_170 Hb_009615_170 Hb_000174_060--Hb_009615_170 Hb_002276_240 Hb_002276_240 Hb_004129_070--Hb_002276_240 Hb_008253_020 Hb_008253_020 Hb_004129_070--Hb_008253_020 Hb_006615_120 Hb_006615_120 Hb_004129_070--Hb_006615_120 Hb_001033_050 Hb_001033_050 Hb_004129_070--Hb_001033_050 Hb_001135_120 Hb_001135_120 Hb_004129_070--Hb_001135_120 Hb_000289_040 Hb_000289_040 Hb_140049_040--Hb_000289_040 Hb_140049_040--Hb_001767_140 Hb_002876_130 Hb_002876_130 Hb_140049_040--Hb_002876_130 Hb_000230_090 Hb_000230_090 Hb_140049_040--Hb_000230_090 Hb_001277_020 Hb_001277_020 Hb_140049_040--Hb_001277_020 Hb_001318_070 Hb_001318_070 Hb_000243_210--Hb_001318_070 Hb_000099_040 Hb_000099_040 Hb_000243_210--Hb_000099_040 Hb_000671_070 Hb_000671_070 Hb_000243_210--Hb_000671_070 Hb_002205_250 Hb_002205_250 Hb_000243_210--Hb_002205_250 Hb_000879_040 Hb_000879_040 Hb_000243_210--Hb_000879_040 Hb_008253_030 Hb_008253_030 Hb_001767_140--Hb_008253_030 Hb_002253_080 Hb_002253_080 Hb_001767_140--Hb_002253_080 Hb_002267_140 Hb_002267_140 Hb_001767_140--Hb_002267_140 Hb_003866_080 Hb_003866_080 Hb_001767_140--Hb_003866_080 Hb_000614_210 Hb_000614_210 Hb_159558_010--Hb_000614_210 Hb_005542_140 Hb_005542_140 Hb_159558_010--Hb_005542_140 Hb_001814_030 Hb_001814_030 Hb_159558_010--Hb_001814_030 Hb_003206_130 Hb_003206_130 Hb_159558_010--Hb_003206_130 Hb_159558_010--Hb_009615_170 Hb_001821_090 Hb_001821_090 Hb_009615_170--Hb_001821_090 Hb_012395_140 Hb_012395_140 Hb_009615_170--Hb_012395_140 Hb_004884_150 Hb_004884_150 Hb_009615_170--Hb_004884_150 Hb_000579_230 Hb_000579_230 Hb_009615_170--Hb_000579_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
27.5071 43.1617 30.3428 27.0108 36.1798 34.8829
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
15.4613 18.4687 22.4946 31.0358 25.694

CAGE analysis