Hb_004884_150

Information

Type -
Description -
Location Contig4884: 108638-115678
Sequence    

Annotation

kegg
ID rcu:RCOM_0847580
description ubiquitin-activating enzyme E1, putative
nr
ID XP_012089793.1
description PREDICTED: ubiquitin-activating enzyme E1 1-like [Jatropha curcas]
swissprot
ID P92974
description Ubiquitin-activating enzyme E1 2 OS=Arabidopsis thaliana GN=UBA2 PE=1 SV=1
trembl
ID A0A067JS67
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00432 PE=3 SV=1
Gene Ontology
ID GO:0005524
description ubiquitin-activating enzyme e1 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45146: 108679-115707 , PASA_asmbl_45147: 108679-115707 , PASA_asmbl_45148: 113686-113900 , PASA_asmbl_45149: 110172-110615
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004884_150 0.0 - - PREDICTED: ubiquitin-activating enzyme E1 1-like [Jatropha curcas]
2 Hb_009615_170 0.0594838359 - - PREDICTED: sphingoid long-chain bases kinase 1 isoform X1 [Jatropha curcas]
3 Hb_003284_030 0.0605478856 transcription factor TF Family: Orphans PREDICTED: paired amphipathic helix protein Sin3-like 2 isoform X1 [Jatropha curcas]
4 Hb_000174_060 0.0651616899 - - zinc finger family protein [Populus trichocarpa]
5 Hb_005357_260 0.0687973848 - - PREDICTED: polyadenylation and cleavage factor homolog 4 [Jatropha curcas]
6 Hb_000025_320 0.0695269586 - - PREDICTED: pentatricopeptide repeat-containing protein At4g28010 [Jatropha curcas]
7 Hb_023226_080 0.0696722211 transcription factor TF Family: C3H PREDICTED: 30-kDa cleavage and polyadenylation specificity factor 30 isoform X1 [Jatropha curcas]
8 Hb_000176_100 0.0711651182 - - PREDICTED: probable splicing factor 3A subunit 1 [Solanum lycopersicum]
9 Hb_007635_030 0.0719106213 - - PREDICTED: pentatricopeptide repeat-containing protein At1g77360, mitochondrial-like [Jatropha curcas]
10 Hb_001821_090 0.0740379778 transcription factor TF Family: CAMTA PREDICTED: calmodulin-binding transcription activator 2 [Jatropha curcas]
11 Hb_000878_180 0.0743282804 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 12 isoform X1 [Jatropha curcas]
12 Hb_008112_030 0.075167467 - - conserved hypothetical protein [Ricinus communis]
13 Hb_003058_060 0.0751965741 - - PREDICTED: proteasome-associated protein ECM29 homolog [Jatropha curcas]
14 Hb_002107_070 0.0760788134 - - hypothetical protein RCOM_1598630 [Ricinus communis]
15 Hb_001235_230 0.0766953809 - - PREDICTED: protein transport protein SEC16B homolog [Jatropha curcas]
16 Hb_159558_010 0.0770883523 - - PREDICTED: uncharacterized protein LOC105635846 [Jatropha curcas]
17 Hb_157966_010 0.0771204743 - - hypothetical protein JCGZ_13877 [Jatropha curcas]
18 Hb_011202_020 0.0783837709 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 3 isoform X1 [Jatropha curcas]
19 Hb_000960_100 0.0785718259 - - PREDICTED: uncharacterized protein At1g51745 [Jatropha curcas]
20 Hb_000261_030 0.0791018144 - - PREDICTED: uncharacterized protein LOC105633147 [Jatropha curcas]

Gene co-expression network

sample Hb_004884_150 Hb_004884_150 Hb_009615_170 Hb_009615_170 Hb_004884_150--Hb_009615_170 Hb_003284_030 Hb_003284_030 Hb_004884_150--Hb_003284_030 Hb_000174_060 Hb_000174_060 Hb_004884_150--Hb_000174_060 Hb_005357_260 Hb_005357_260 Hb_004884_150--Hb_005357_260 Hb_000025_320 Hb_000025_320 Hb_004884_150--Hb_000025_320 Hb_023226_080 Hb_023226_080 Hb_004884_150--Hb_023226_080 Hb_001821_090 Hb_001821_090 Hb_009615_170--Hb_001821_090 Hb_012395_140 Hb_012395_140 Hb_009615_170--Hb_012395_140 Hb_159558_010 Hb_159558_010 Hb_009615_170--Hb_159558_010 Hb_000579_230 Hb_000579_230 Hb_009615_170--Hb_000579_230 Hb_009615_170--Hb_000174_060 Hb_000949_010 Hb_000949_010 Hb_003284_030--Hb_000949_010 Hb_174865_020 Hb_174865_020 Hb_003284_030--Hb_174865_020 Hb_000176_100 Hb_000176_100 Hb_003284_030--Hb_000176_100 Hb_001235_230 Hb_001235_230 Hb_003284_030--Hb_001235_230 Hb_018133_050 Hb_018133_050 Hb_003284_030--Hb_018133_050 Hb_004129_070 Hb_004129_070 Hb_000174_060--Hb_004129_070 Hb_140049_040 Hb_140049_040 Hb_000174_060--Hb_140049_040 Hb_000243_210 Hb_000243_210 Hb_000174_060--Hb_000243_210 Hb_001767_140 Hb_001767_140 Hb_000174_060--Hb_001767_140 Hb_000174_060--Hb_159558_010 Hb_011689_030 Hb_011689_030 Hb_005357_260--Hb_011689_030 Hb_005357_260--Hb_000176_100 Hb_005402_040 Hb_005402_040 Hb_005357_260--Hb_005402_040 Hb_011202_020 Hb_011202_020 Hb_005357_260--Hb_011202_020 Hb_000665_230 Hb_000665_230 Hb_005357_260--Hb_000665_230 Hb_003124_160 Hb_003124_160 Hb_005357_260--Hb_003124_160 Hb_000671_070 Hb_000671_070 Hb_000025_320--Hb_000671_070 Hb_001191_120 Hb_001191_120 Hb_000025_320--Hb_001191_120 Hb_001550_060 Hb_001550_060 Hb_000025_320--Hb_001550_060 Hb_000960_100 Hb_000960_100 Hb_000025_320--Hb_000960_100 Hb_002022_070 Hb_002022_070 Hb_000025_320--Hb_002022_070 Hb_006420_040 Hb_006420_040 Hb_000025_320--Hb_006420_040 Hb_005542_140 Hb_005542_140 Hb_023226_080--Hb_005542_140 Hb_023226_080--Hb_000176_100 Hb_000069_410 Hb_000069_410 Hb_023226_080--Hb_000069_410 Hb_023226_080--Hb_159558_010 Hb_000012_260 Hb_000012_260 Hb_023226_080--Hb_000012_260 Hb_023226_080--Hb_009615_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
48.0013 79.1234 36.3931 35.8265 63.5612 60.3501
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
17.1006 26.8629 37.6328 57.3724 39.3797

CAGE analysis