Hb_006420_040

Information

Type transcription factor
Description TF Family: Orphans
Location Contig6420: 54643-65502
Sequence    

Annotation

kegg
ID rcu:RCOM_0699610
description hypothetical protein
nr
ID XP_012092008.1
description PREDICTED: paired amphipathic helix protein Sin3-like 4 isoform X2 [Jatropha curcas]
swissprot
ID O04539
description Paired amphipathic helix protein Sin3-like 4 OS=Arabidopsis thaliana GN=SNL4 PE=3 SV=3
trembl
ID B9S2H7
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0699610 PE=4 SV=1
Gene Ontology
ID GO:0006355
description paired amphipathic helix protein sin3-like 4 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52197: 55014-55846 , PASA_asmbl_52198: 55876-65284 , PASA_asmbl_52199: 62635-63783
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006420_040 0.0 transcription factor TF Family: Orphans PREDICTED: paired amphipathic helix protein Sin3-like 4 isoform X2 [Jatropha curcas]
2 Hb_001550_060 0.0279630462 - - PREDICTED: serine/threonine-protein phosphatase BSL3 isoform X4 [Jatropha curcas]
3 Hb_000441_120 0.0499278462 - - PREDICTED: DNA-damage-repair/toleration protein DRT111, chloroplastic isoform X1 [Jatropha curcas]
4 Hb_000671_070 0.058309347 - - PREDICTED: uncharacterized protein LOC105630621 [Jatropha curcas]
5 Hb_000025_320 0.058404606 - - PREDICTED: pentatricopeptide repeat-containing protein At4g28010 [Jatropha curcas]
6 Hb_003206_130 0.0599292286 - - PREDICTED: protein NRDE2 homolog [Jatropha curcas]
7 Hb_009503_030 0.0611262254 - - protein dimerization, putative [Ricinus communis]
8 Hb_000395_130 0.0614303268 - - PREDICTED: N6-adenosine-methyltransferase MT-A70-like [Jatropha curcas]
9 Hb_012395_140 0.0616733814 - - PREDICTED: uncharacterized protein LOC105638411 [Jatropha curcas]
10 Hb_000207_180 0.0620512099 - - PREDICTED: calponin homology domain-containing protein DDB_G0272472 [Jatropha curcas]
11 Hb_000473_110 0.0623424403 - - PREDICTED: PP2A regulatory subunit TAP46 [Jatropha curcas]
12 Hb_000731_270 0.0642871564 - - PREDICTED: polyadenylate-binding protein RBP45B isoform X1 [Jatropha curcas]
13 Hb_000347_070 0.0645600031 - - conserved hypothetical protein [Ricinus communis]
14 Hb_001195_320 0.0666287733 - - PREDICTED: S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase [Jatropha curcas]
15 Hb_000614_210 0.066656627 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor GT-1-like isoform X1 [Jatropha curcas]
16 Hb_009545_100 0.0667670206 - - PREDICTED: protein OBERON 1 [Jatropha curcas]
17 Hb_003029_110 0.0668709568 - - PREDICTED: uncharacterized protein LOC105640062 isoform X1 [Jatropha curcas]
18 Hb_001814_030 0.0671575318 - - PREDICTED: uncharacterized protein LOC105650634 [Jatropha curcas]
19 Hb_005730_090 0.0689620326 - - PREDICTED: uncharacterized protein LOC105631484 [Jatropha curcas]
20 Hb_000975_040 0.0692628499 - - hypothetical protein CICLE_v10028249mg [Citrus clementina]

Gene co-expression network

sample Hb_006420_040 Hb_006420_040 Hb_001550_060 Hb_001550_060 Hb_006420_040--Hb_001550_060 Hb_000441_120 Hb_000441_120 Hb_006420_040--Hb_000441_120 Hb_000671_070 Hb_000671_070 Hb_006420_040--Hb_000671_070 Hb_000025_320 Hb_000025_320 Hb_006420_040--Hb_000025_320 Hb_003206_130 Hb_003206_130 Hb_006420_040--Hb_003206_130 Hb_009503_030 Hb_009503_030 Hb_006420_040--Hb_009503_030 Hb_012395_140 Hb_012395_140 Hb_001550_060--Hb_012395_140 Hb_001550_060--Hb_003206_130 Hb_001550_060--Hb_000025_320 Hb_001195_320 Hb_001195_320 Hb_001550_060--Hb_001195_320 Hb_000395_070 Hb_000395_070 Hb_001550_060--Hb_000395_070 Hb_000165_040 Hb_000165_040 Hb_000441_120--Hb_000165_040 Hb_000441_120--Hb_003206_130 Hb_000207_180 Hb_000207_180 Hb_000441_120--Hb_000207_180 Hb_000395_130 Hb_000395_130 Hb_000441_120--Hb_000395_130 Hb_009270_020 Hb_009270_020 Hb_000441_120--Hb_009270_020 Hb_001191_120 Hb_001191_120 Hb_000671_070--Hb_001191_120 Hb_000671_070--Hb_000025_320 Hb_000243_210 Hb_000243_210 Hb_000671_070--Hb_000243_210 Hb_000914_120 Hb_000914_120 Hb_000671_070--Hb_000914_120 Hb_089140_050 Hb_089140_050 Hb_000671_070--Hb_089140_050 Hb_000025_320--Hb_001191_120 Hb_000960_100 Hb_000960_100 Hb_000025_320--Hb_000960_100 Hb_002022_070 Hb_002022_070 Hb_000025_320--Hb_002022_070 Hb_003470_080 Hb_003470_080 Hb_003206_130--Hb_003470_080 Hb_159558_010 Hb_159558_010 Hb_003206_130--Hb_159558_010 Hb_000614_210 Hb_000614_210 Hb_003206_130--Hb_000614_210 Hb_000796_030 Hb_000796_030 Hb_009503_030--Hb_000796_030 Hb_003785_040 Hb_003785_040 Hb_009503_030--Hb_003785_040 Hb_000574_440 Hb_000574_440 Hb_009503_030--Hb_000574_440 Hb_009545_100 Hb_009545_100 Hb_009503_030--Hb_009545_100 Hb_000502_050 Hb_000502_050 Hb_009503_030--Hb_000502_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.0219 20.2066 11.9523 10.9896 22.5546 16.8627
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.2927 11.8272 15.644 16.9953 16.6335

CAGE analysis