Hb_009545_100

Information

Type -
Description -
Location Contig9545: 61570-66550
Sequence    

Annotation

kegg
ID rcu:RCOM_0911900
description protein binding protein, putative
nr
ID XP_012069646.1
description PREDICTED: protein OBERON 1 [Jatropha curcas]
swissprot
ID Q9S736
description Protein OBERON 1 OS=Arabidopsis thaliana GN=OBE1 PE=1 SV=1
trembl
ID A0A067KVM5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02185 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63510: 62300-64385 , PASA_asmbl_63512: 62332-66278 , PASA_asmbl_63513: 66282-66523
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009545_100 0.0 - - PREDICTED: protein OBERON 1 [Jatropha curcas]
2 Hb_002025_020 0.0512228789 - - PREDICTED: pentatricopeptide repeat-containing protein At5g39710 [Jatropha curcas]
3 Hb_000343_120 0.0554212362 - - PREDICTED: pentatricopeptide repeat-containing protein At3g16010 [Jatropha curcas]
4 Hb_000347_070 0.0594194302 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000116_500 0.0621292288 - - PREDICTED: trafficking protein particle complex subunit 11 [Jatropha curcas]
6 Hb_003029_110 0.0624752371 - - PREDICTED: uncharacterized protein LOC105640062 isoform X1 [Jatropha curcas]
7 Hb_000225_040 0.0624839617 - - PREDICTED: translation factor GUF1 homolog, mitochondrial [Nelumbo nucifera]
8 Hb_009175_020 0.0632314736 - - PREDICTED: uncharacterized protein LOC101303140 [Fragaria vesca subsp. vesca]
9 Hb_001199_100 0.063271721 - - PREDICTED: uncharacterized protein LOC105639813 [Jatropha curcas]
10 Hb_009503_030 0.0639499733 - - protein dimerization, putative [Ricinus communis]
11 Hb_005730_090 0.0642268768 - - PREDICTED: uncharacterized protein LOC105631484 [Jatropha curcas]
12 Hb_000796_030 0.0658755074 - - PREDICTED: pentatricopeptide repeat-containing protein At4g32450, mitochondrial-like [Jatropha curcas]
13 Hb_006420_040 0.0667670206 transcription factor TF Family: Orphans PREDICTED: paired amphipathic helix protein Sin3-like 4 isoform X2 [Jatropha curcas]
14 Hb_000190_120 0.0669475406 - - PREDICTED: uncharacterized protein LOC105649936 [Jatropha curcas]
15 Hb_001550_060 0.0669901157 - - PREDICTED: serine/threonine-protein phosphatase BSL3 isoform X4 [Jatropha curcas]
16 Hb_000166_130 0.0680388602 - - conserved hypothetical protein [Ricinus communis]
17 Hb_010618_010 0.0687188216 - - PREDICTED: inactive poly [ADP-ribose] polymerase RCD1 [Jatropha curcas]
18 Hb_003253_040 0.0690502846 - - PREDICTED: uncharacterized protein At5g41620 [Jatropha curcas]
19 Hb_000792_010 0.0694740816 - - PREDICTED: mRNA-capping enzyme [Jatropha curcas]
20 Hb_123903_010 0.0699368279 transcription factor TF Family: IWS1 conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_009545_100 Hb_009545_100 Hb_002025_020 Hb_002025_020 Hb_009545_100--Hb_002025_020 Hb_000343_120 Hb_000343_120 Hb_009545_100--Hb_000343_120 Hb_000347_070 Hb_000347_070 Hb_009545_100--Hb_000347_070 Hb_000116_500 Hb_000116_500 Hb_009545_100--Hb_000116_500 Hb_003029_110 Hb_003029_110 Hb_009545_100--Hb_003029_110 Hb_000225_040 Hb_000225_040 Hb_009545_100--Hb_000225_040 Hb_002025_020--Hb_000347_070 Hb_003158_010 Hb_003158_010 Hb_002025_020--Hb_003158_010 Hb_002835_370 Hb_002835_370 Hb_002025_020--Hb_002835_370 Hb_004221_020 Hb_004221_020 Hb_002025_020--Hb_004221_020 Hb_000780_230 Hb_000780_230 Hb_002025_020--Hb_000780_230 Hb_000166_130 Hb_000166_130 Hb_000343_120--Hb_000166_130 Hb_000035_290 Hb_000035_290 Hb_000343_120--Hb_000035_290 Hb_000028_280 Hb_000028_280 Hb_000343_120--Hb_000028_280 Hb_001199_100 Hb_001199_100 Hb_000343_120--Hb_001199_100 Hb_000343_120--Hb_003029_110 Hb_000731_270 Hb_000731_270 Hb_000347_070--Hb_000731_270 Hb_004619_030 Hb_004619_030 Hb_000347_070--Hb_004619_030 Hb_002375_010 Hb_002375_010 Hb_000347_070--Hb_002375_010 Hb_003163_020 Hb_003163_020 Hb_000347_070--Hb_003163_020 Hb_000190_120 Hb_000190_120 Hb_000347_070--Hb_000190_120 Hb_002811_060 Hb_002811_060 Hb_000116_500--Hb_002811_060 Hb_021297_050 Hb_021297_050 Hb_000116_500--Hb_021297_050 Hb_012022_090 Hb_012022_090 Hb_000116_500--Hb_012022_090 Hb_123903_010 Hb_123903_010 Hb_000116_500--Hb_123903_010 Hb_001195_320 Hb_001195_320 Hb_000116_500--Hb_001195_320 Hb_003029_110--Hb_000166_130 Hb_003029_110--Hb_001195_320 Hb_005731_030 Hb_005731_030 Hb_003029_110--Hb_005731_030 Hb_010222_050 Hb_010222_050 Hb_003029_110--Hb_010222_050 Hb_003371_110 Hb_003371_110 Hb_003029_110--Hb_003371_110 Hb_000011_200 Hb_000011_200 Hb_000225_040--Hb_000011_200 Hb_000225_040--Hb_003158_010 Hb_167498_010 Hb_167498_010 Hb_000225_040--Hb_167498_010 Hb_010618_010 Hb_010618_010 Hb_000225_040--Hb_010618_010 Hb_000193_190 Hb_000193_190 Hb_000225_040--Hb_000193_190 Hb_000329_470 Hb_000329_470 Hb_000225_040--Hb_000329_470
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.14416 7.32745 3.80235 5.97537 10.2688 8.78454
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.46424 6.93686 7.7278 7.52563 7.00245

CAGE analysis