Hb_000329_470

Information

Type -
Description -
Location Contig329: 305488-325903
Sequence    

Annotation

kegg
ID rcu:RCOM_1609680
description ccr4-not transcription complex, putative
nr
ID XP_002511644.1
description ccr4-not transcription complex, putative [Ricinus communis]
swissprot
ID Q6ZQ08
description CCR4-NOT transcription complex subunit 1 OS=Mus musculus GN=Cnot1 PE=1 SV=2
trembl
ID B9RD55
description Ccr4-not transcription complex, putative OS=Ricinus communis GN=RCOM_1609680 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34544: 305567-317780 , PASA_asmbl_34545: 305567-310439 , PASA_asmbl_34546: 318401-321352 , PASA_asmbl_34547: 321773-323912 , PASA_asmbl_34548: 324037-324354 , PASA_asmbl_34549: 324740-325809
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000329_470 0.0 - - ccr4-not transcription complex, putative [Ricinus communis]
2 Hb_003158_010 0.0450455333 - - hypothetical protein JCGZ_17361 [Jatropha curcas]
3 Hb_003226_180 0.0478522762 - - PREDICTED: uncharacterized protein C57A7.06 [Jatropha curcas]
4 Hb_167498_010 0.0516226167 - - PREDICTED: WPP domain-interacting protein 1-like [Jatropha curcas]
5 Hb_000225_040 0.0558321864 - - PREDICTED: translation factor GUF1 homolog, mitochondrial [Nelumbo nucifera]
6 Hb_001369_730 0.059073423 - - F5O11.10, putative isoform 1 [Theobroma cacao]
7 Hb_001579_220 0.0604968791 - - PREDICTED: pantothenate kinase 1 [Jatropha curcas]
8 Hb_002107_030 0.0637743238 - - PREDICTED: COPII coat assembly protein SEC16 isoform X1 [Jatropha curcas]
9 Hb_000011_200 0.0648459629 - - PREDICTED: 26S protease regulatory subunit 7 isoform X1 [Jatropha curcas]
10 Hb_002078_130 0.0696205425 - - PREDICTED: uncharacterized protein LOC105644797 [Jatropha curcas]
11 Hb_007254_070 0.0699262174 - - PREDICTED: E3 ubiquitin-protein ligase HERC2-like isoform X1 [Jatropha curcas]
12 Hb_000556_160 0.0719453758 - - PREDICTED: ankyrin repeat and zinc finger domain-containing protein 1 [Jatropha curcas]
13 Hb_000260_270 0.0723723948 - - zinc finger protein, putative [Ricinus communis]
14 Hb_000193_190 0.0737506398 - - PREDICTED: dnaJ homolog subfamily C member 16 [Jatropha curcas]
15 Hb_003058_190 0.0738685836 - - PREDICTED: uncharacterized protein LOC105628951 isoform X1 [Jatropha curcas]
16 Hb_004994_220 0.0746743546 - - PREDICTED: K(+) efflux antiporter 2, chloroplastic-like isoform X2 [Jatropha curcas]
17 Hb_011671_430 0.0754507651 - - PREDICTED: uncharacterized protein LOC105648668 [Jatropha curcas]
18 Hb_004800_080 0.0763342193 - - PREDICTED: acidic leucine-rich nuclear phosphoprotein 32-related protein [Jatropha curcas]
19 Hb_001638_270 0.0769448002 - - PREDICTED: vacuolar protein sorting-associated protein 8 homolog isoform X2 [Jatropha curcas]
20 Hb_000395_190 0.0771925517 - - PREDICTED: F-box/LRR-repeat protein 7-like [Jatropha curcas]

Gene co-expression network

sample Hb_000329_470 Hb_000329_470 Hb_003158_010 Hb_003158_010 Hb_000329_470--Hb_003158_010 Hb_003226_180 Hb_003226_180 Hb_000329_470--Hb_003226_180 Hb_167498_010 Hb_167498_010 Hb_000329_470--Hb_167498_010 Hb_000225_040 Hb_000225_040 Hb_000329_470--Hb_000225_040 Hb_001369_730 Hb_001369_730 Hb_000329_470--Hb_001369_730 Hb_001579_220 Hb_001579_220 Hb_000329_470--Hb_001579_220 Hb_003158_010--Hb_167498_010 Hb_003158_010--Hb_000225_040 Hb_002025_020 Hb_002025_020 Hb_003158_010--Hb_002025_020 Hb_000011_200 Hb_000011_200 Hb_003158_010--Hb_000011_200 Hb_000347_070 Hb_000347_070 Hb_003158_010--Hb_000347_070 Hb_003226_180--Hb_003158_010 Hb_003106_060 Hb_003106_060 Hb_003226_180--Hb_003106_060 Hb_003376_400 Hb_003376_400 Hb_003226_180--Hb_003376_400 Hb_000373_280 Hb_000373_280 Hb_003226_180--Hb_000373_280 Hb_006913_030 Hb_006913_030 Hb_003226_180--Hb_006913_030 Hb_167498_010--Hb_001369_730 Hb_001409_020 Hb_001409_020 Hb_167498_010--Hb_001409_020 Hb_167498_010--Hb_000225_040 Hb_007254_070 Hb_007254_070 Hb_167498_010--Hb_007254_070 Hb_000225_040--Hb_000011_200 Hb_010618_010 Hb_010618_010 Hb_000225_040--Hb_010618_010 Hb_000193_190 Hb_000193_190 Hb_000225_040--Hb_000193_190 Hb_001369_730--Hb_001409_020 Hb_001198_100 Hb_001198_100 Hb_001369_730--Hb_001198_100 Hb_000732_010 Hb_000732_010 Hb_001369_730--Hb_000732_010 Hb_004800_080 Hb_004800_080 Hb_001369_730--Hb_004800_080 Hb_003050_220 Hb_003050_220 Hb_001579_220--Hb_003050_220 Hb_000015_040 Hb_000015_040 Hb_001579_220--Hb_000015_040 Hb_000220_220 Hb_000220_220 Hb_001579_220--Hb_000220_220 Hb_000680_160 Hb_000680_160 Hb_001579_220--Hb_000680_160 Hb_012035_050 Hb_012035_050 Hb_001579_220--Hb_012035_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
18.9341 16.3027 7.60694 11.8376 20.1194 18.2922
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
22.4465 18.6889 18.4008 19.7785 14.562

CAGE analysis