Hb_003376_400

Information

Type -
Description -
Location Contig3376: 270837-273110
Sequence    

Annotation

kegg
ID rcu:RCOM_0760970
description pentatricopeptide repeat-containing protein, putative
nr
ID XP_012082370.1
description PREDICTED: pentatricopeptide repeat-containing protein At2g37230 [Jatropha curcas]
swissprot
ID Q9ZUU3
description Pentatricopeptide repeat-containing protein At2g37230 OS=Arabidopsis thaliana GN=At2g37230 PE=2 SV=1
trembl
ID A0A067JYZ8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16511 PE=4 SV=1
Gene Ontology
ID GO:0009535
description pentatricopeptide repeat-containing protein at2g37230

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35369: 273145-273326
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003376_400 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At2g37230 [Jatropha curcas]
2 Hb_003226_180 0.0714409526 - - PREDICTED: uncharacterized protein C57A7.06 [Jatropha curcas]
3 Hb_000976_300 0.0799263203 - - PREDICTED: uncharacterized protein LOC105646229 [Jatropha curcas]
4 Hb_166222_010 0.0840452185 - - hypothetical protein POPTR_0017s08350g [Populus trichocarpa]
5 Hb_004143_130 0.0857847545 - - PREDICTED: BEACH domain-containing protein lvsC [Jatropha curcas]
6 Hb_000377_090 0.0858271483 rubber biosynthesis Gene Name: Acetyl-CoA acetyltransferase acetyl-CoA C-acetyltransferase [Hevea brasiliensis]
7 Hb_001449_040 0.0869647382 - - PREDICTED: SWR1 complex subunit 2 isoform X2 [Jatropha curcas]
8 Hb_001357_020 0.0895321232 - - PREDICTED: EH domain-containing protein 1 isoform X2 [Jatropha curcas]
9 Hb_002600_150 0.0911974644 - - PREDICTED: uncharacterized protein LOC105646805 isoform X1 [Jatropha curcas]
10 Hb_000028_480 0.0919425505 - - PREDICTED: putative 3,4-dihydroxy-2-butanone kinase [Jatropha curcas]
11 Hb_003253_040 0.0926267643 - - PREDICTED: uncharacterized protein At5g41620 [Jatropha curcas]
12 Hb_004225_050 0.0932944217 transcription factor TF Family: MYB-related DNA binding protein, putative [Ricinus communis]
13 Hb_000329_470 0.093504556 - - ccr4-not transcription complex, putative [Ricinus communis]
14 Hb_004994_220 0.0941740446 - - PREDICTED: K(+) efflux antiporter 2, chloroplastic-like isoform X2 [Jatropha curcas]
15 Hb_005901_020 0.0961000838 - - PREDICTED: elongation factor Tu GTP-binding domain-containing protein 1 [Jatropha curcas]
16 Hb_010174_110 0.097902276 - - hypothetical protein JCGZ_17880 [Jatropha curcas]
17 Hb_000053_040 0.0989344062 - - hypothetical protein CISIN_1g0010392mg, partial [Citrus sinensis]
18 Hb_004156_050 0.1008102664 transcription factor TF Family: TCP PREDICTED: transcription factor TCP23-like [Populus euphratica]
19 Hb_002518_260 0.1010866113 - - PREDICTED: zinc finger CCCH domain-containing protein 40-like [Jatropha curcas]
20 Hb_000032_280 0.1016257511 - - PREDICTED: long chain acyl-CoA synthetase 4-like [Jatropha curcas]

Gene co-expression network

sample Hb_003376_400 Hb_003376_400 Hb_003226_180 Hb_003226_180 Hb_003376_400--Hb_003226_180 Hb_000976_300 Hb_000976_300 Hb_003376_400--Hb_000976_300 Hb_166222_010 Hb_166222_010 Hb_003376_400--Hb_166222_010 Hb_004143_130 Hb_004143_130 Hb_003376_400--Hb_004143_130 Hb_000377_090 Hb_000377_090 Hb_003376_400--Hb_000377_090 Hb_001449_040 Hb_001449_040 Hb_003376_400--Hb_001449_040 Hb_000329_470 Hb_000329_470 Hb_003226_180--Hb_000329_470 Hb_003158_010 Hb_003158_010 Hb_003226_180--Hb_003158_010 Hb_003106_060 Hb_003106_060 Hb_003226_180--Hb_003106_060 Hb_000373_280 Hb_000373_280 Hb_003226_180--Hb_000373_280 Hb_006913_030 Hb_006913_030 Hb_003226_180--Hb_006913_030 Hb_000028_480 Hb_000028_480 Hb_000976_300--Hb_000028_480 Hb_002496_010 Hb_002496_010 Hb_000976_300--Hb_002496_010 Hb_001357_020 Hb_001357_020 Hb_000976_300--Hb_001357_020 Hb_002518_260 Hb_002518_260 Hb_000976_300--Hb_002518_260 Hb_000977_110 Hb_000977_110 Hb_000976_300--Hb_000977_110 Hb_002600_150 Hb_002600_150 Hb_000976_300--Hb_002600_150 Hb_002271_030 Hb_002271_030 Hb_166222_010--Hb_002271_030 Hb_166222_010--Hb_003226_180 Hb_012098_080 Hb_012098_080 Hb_166222_010--Hb_012098_080 Hb_000032_280 Hb_000032_280 Hb_166222_010--Hb_000032_280 Hb_000111_420 Hb_000111_420 Hb_166222_010--Hb_000111_420 Hb_000028_280 Hb_000028_280 Hb_004143_130--Hb_000028_280 Hb_002942_100 Hb_002942_100 Hb_004143_130--Hb_002942_100 Hb_003253_040 Hb_003253_040 Hb_004143_130--Hb_003253_040 Hb_010174_110 Hb_010174_110 Hb_004143_130--Hb_010174_110 Hb_002740_110 Hb_002740_110 Hb_004143_130--Hb_002740_110 Hb_004032_380 Hb_004032_380 Hb_004143_130--Hb_004032_380 Hb_004994_220 Hb_004994_220 Hb_000377_090--Hb_004994_220 Hb_006831_040 Hb_006831_040 Hb_000377_090--Hb_006831_040 Hb_000377_090--Hb_010174_110 Hb_002400_410 Hb_002400_410 Hb_000377_090--Hb_002400_410 Hb_017358_040 Hb_017358_040 Hb_000377_090--Hb_017358_040 Hb_056691_060 Hb_056691_060 Hb_001449_040--Hb_056691_060 Hb_000008_290 Hb_000008_290 Hb_001449_040--Hb_000008_290 Hb_000613_050 Hb_000613_050 Hb_001449_040--Hb_000613_050 Hb_001496_070 Hb_001496_070 Hb_001449_040--Hb_001496_070 Hb_001343_040 Hb_001343_040 Hb_001449_040--Hb_001343_040 Hb_005901_020 Hb_005901_020 Hb_001449_040--Hb_005901_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
17.8069 11.7208 5.45943 9.17359 14.9828 18.1469
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
18.1609 11.4383 16.8921 22.1884 20.0081

CAGE analysis