Hb_003106_060

Information

Type -
Description -
Location Contig3106: 36967-42342
Sequence    

Annotation

kegg
ID pop:POPTR_0015s08140g
description hypothetical protein
nr
ID XP_006374507.1
description hypothetical protein POPTR_0015s08140g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID U5FQ14
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0015s08140g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32870: 37082-40348 , PASA_asmbl_32871: 41469-41916
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003106_060 0.0 - - hypothetical protein POPTR_0015s08140g [Populus trichocarpa]
2 Hb_007441_200 0.0608763771 - - PREDICTED: uncharacterized protein LOC105643248 [Jatropha curcas]
3 Hb_003226_180 0.065318608 - - PREDICTED: uncharacterized protein C57A7.06 [Jatropha curcas]
4 Hb_000227_120 0.0656832597 - - conserved hypothetical protein [Ricinus communis]
5 Hb_003142_020 0.074308095 - - PREDICTED: uncharacterized protein LOC105648334 [Jatropha curcas]
6 Hb_003464_060 0.0787225982 - - PREDICTED: F-box protein PP2-A15 [Jatropha curcas]
7 Hb_000329_470 0.0806560909 - - ccr4-not transcription complex, putative [Ricinus communis]
8 Hb_001007_060 0.0836251248 - - Transcriptional corepressor SEUSS [Glycine soja]
9 Hb_031421_020 0.083784204 - - ADP-ribose pyrophosphatase, putative [Ricinus communis]
10 Hb_002016_110 0.0873325126 - - transducin family protein [Populus trichocarpa]
11 Hb_009393_080 0.0873388588 - - plant organelle RNA recognition domain protein [Medicago truncatula]
12 Hb_003050_220 0.0903897855 - - hypothetical protein JCGZ_04601 [Jatropha curcas]
13 Hb_018838_030 0.0904062008 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000571_120 0.0920697621 - - importin beta-1, putative [Ricinus communis]
15 Hb_007044_140 0.0929038436 - - PREDICTED: translation initiation factor eIF-2B subunit delta [Jatropha curcas]
16 Hb_002137_020 0.0931287321 - - ubiquitin-protein ligase, putative [Ricinus communis]
17 Hb_000853_420 0.0945324312 - - PREDICTED: phosphoribosylformylglycinamidine cyclo-ligase, chloroplastic/mitochondrial [Jatropha curcas]
18 Hb_004800_080 0.0953433632 - - PREDICTED: acidic leucine-rich nuclear phosphoprotein 32-related protein [Jatropha curcas]
19 Hb_000107_620 0.0953681255 - - PREDICTED: transcription initiation factor TFIID subunit 15 [Jatropha curcas]
20 Hb_006915_050 0.0953940815 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 6-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_003106_060 Hb_003106_060 Hb_007441_200 Hb_007441_200 Hb_003106_060--Hb_007441_200 Hb_003226_180 Hb_003226_180 Hb_003106_060--Hb_003226_180 Hb_000227_120 Hb_000227_120 Hb_003106_060--Hb_000227_120 Hb_003142_020 Hb_003142_020 Hb_003106_060--Hb_003142_020 Hb_003464_060 Hb_003464_060 Hb_003106_060--Hb_003464_060 Hb_000329_470 Hb_000329_470 Hb_003106_060--Hb_000329_470 Hb_005618_170 Hb_005618_170 Hb_007441_200--Hb_005618_170 Hb_005305_080 Hb_005305_080 Hb_007441_200--Hb_005305_080 Hb_000571_120 Hb_000571_120 Hb_007441_200--Hb_000571_120 Hb_018838_030 Hb_018838_030 Hb_007441_200--Hb_018838_030 Hb_000805_020 Hb_000805_020 Hb_007441_200--Hb_000805_020 Hb_003226_180--Hb_000329_470 Hb_003158_010 Hb_003158_010 Hb_003226_180--Hb_003158_010 Hb_003376_400 Hb_003376_400 Hb_003226_180--Hb_003376_400 Hb_000373_280 Hb_000373_280 Hb_003226_180--Hb_000373_280 Hb_006913_030 Hb_006913_030 Hb_003226_180--Hb_006913_030 Hb_000227_120--Hb_003142_020 Hb_000684_470 Hb_000684_470 Hb_000227_120--Hb_000684_470 Hb_002660_010 Hb_002660_010 Hb_000227_120--Hb_002660_010 Hb_003291_010 Hb_003291_010 Hb_000227_120--Hb_003291_010 Hb_009382_010 Hb_009382_010 Hb_000227_120--Hb_009382_010 Hb_001007_060 Hb_001007_060 Hb_003142_020--Hb_001007_060 Hb_002725_120 Hb_002725_120 Hb_003142_020--Hb_002725_120 Hb_003142_020--Hb_003291_010 Hb_009767_110 Hb_009767_110 Hb_003142_020--Hb_009767_110 Hb_000768_040 Hb_000768_040 Hb_003464_060--Hb_000768_040 Hb_000030_300 Hb_000030_300 Hb_003464_060--Hb_000030_300 Hb_002016_110 Hb_002016_110 Hb_003464_060--Hb_002016_110 Hb_004684_010 Hb_004684_010 Hb_003464_060--Hb_004684_010 Hb_004907_110 Hb_004907_110 Hb_003464_060--Hb_004907_110 Hb_002026_180 Hb_002026_180 Hb_003464_060--Hb_002026_180 Hb_000329_470--Hb_003158_010 Hb_167498_010 Hb_167498_010 Hb_000329_470--Hb_167498_010 Hb_000225_040 Hb_000225_040 Hb_000329_470--Hb_000225_040 Hb_001369_730 Hb_001369_730 Hb_000329_470--Hb_001369_730 Hb_001579_220 Hb_001579_220 Hb_000329_470--Hb_001579_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
16.7734 14.1899 5.7322 5.55808 14.6664 18.4239
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
23.3086 18.4368 19.9674 15.8632 14.7223

CAGE analysis