Hb_001007_060

Information

Type -
Description -
Location Contig1007: 50068-60830
Sequence    

Annotation

kegg
ID rcu:RCOM_0559370
description Transcriptional corepressor SEUSS, putative
nr
ID KHN23436.1
description Transcriptional corepressor SEUSS [Glycine soja]
swissprot
ID Q8W234
description Transcriptional corepressor SEUSS OS=Arabidopsis thaliana GN=SEU PE=1 SV=1
trembl
ID A0A0B2QPI6
description Transcriptional corepressor SEUSS OS=Glycine soja GN=glysoja_015738 PE=4 SV=1
Gene Ontology
ID GO:0005488
description transcriptional corepressor seuss-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00449: 50144-60804 , PASA_asmbl_00450: 53670-54410 , PASA_asmbl_00452: 58073-58302 , PASA_asmbl_00453: 58410-58937 , PASA_asmbl_00454: 59049-59467
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001007_060 0.0 - - Transcriptional corepressor SEUSS [Glycine soja]
2 Hb_003142_020 0.0620208499 - - PREDICTED: uncharacterized protein LOC105648334 [Jatropha curcas]
3 Hb_003057_110 0.0667530618 - - PREDICTED: uncharacterized protein LOC105639179 [Jatropha curcas]
4 Hb_004143_130 0.0805680094 - - PREDICTED: BEACH domain-containing protein lvsC [Jatropha curcas]
5 Hb_000574_390 0.0816069492 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 6-like [Jatropha curcas]
6 Hb_003106_060 0.0836251248 - - hypothetical protein POPTR_0015s08140g [Populus trichocarpa]
7 Hb_006915_050 0.0843004606 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 6-like isoform X1 [Jatropha curcas]
8 Hb_000577_010 0.0852776977 - - hypothetical protein JCGZ_23887 [Jatropha curcas]
9 Hb_004684_010 0.0859131194 - - PREDICTED: triacylglycerol lipase SDP1 [Jatropha curcas]
10 Hb_001198_100 0.0865023189 - - PREDICTED: serine hydroxymethyltransferase 7-like [Jatropha curcas]
11 Hb_002725_120 0.0882427538 - - PREDICTED: pentatricopeptide repeat-containing protein At1g05750, chloroplastic [Jatropha curcas]
12 Hb_001507_020 0.0882940775 - - PREDICTED: pentatricopeptide repeat-containing protein At4g14170 [Jatropha curcas]
13 Hb_007044_140 0.0891184011 - - PREDICTED: translation initiation factor eIF-2B subunit delta [Jatropha curcas]
14 Hb_004225_050 0.0895515357 transcription factor TF Family: MYB-related DNA binding protein, putative [Ricinus communis]
15 Hb_002311_040 0.0899015045 - - hypothetical protein JCGZ_18966 [Jatropha curcas]
16 Hb_003464_060 0.0901074047 - - PREDICTED: F-box protein PP2-A15 [Jatropha curcas]
17 Hb_006649_050 0.0924914687 - - PREDICTED: zinc finger CCCH domain-containing protein 41 [Jatropha curcas]
18 Hb_003291_010 0.0929824475 - - ATP-dependent protease La, putative [Ricinus communis]
19 Hb_000291_050 0.0931045626 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105638874 isoform X1 [Jatropha curcas]
20 Hb_004724_060 0.0933520018 - - PREDICTED: uncharacterized protein LOC105640155 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001007_060 Hb_001007_060 Hb_003142_020 Hb_003142_020 Hb_001007_060--Hb_003142_020 Hb_003057_110 Hb_003057_110 Hb_001007_060--Hb_003057_110 Hb_004143_130 Hb_004143_130 Hb_001007_060--Hb_004143_130 Hb_000574_390 Hb_000574_390 Hb_001007_060--Hb_000574_390 Hb_003106_060 Hb_003106_060 Hb_001007_060--Hb_003106_060 Hb_006915_050 Hb_006915_050 Hb_001007_060--Hb_006915_050 Hb_000227_120 Hb_000227_120 Hb_003142_020--Hb_000227_120 Hb_002725_120 Hb_002725_120 Hb_003142_020--Hb_002725_120 Hb_003291_010 Hb_003291_010 Hb_003142_020--Hb_003291_010 Hb_003142_020--Hb_003106_060 Hb_009767_110 Hb_009767_110 Hb_003142_020--Hb_009767_110 Hb_008643_100 Hb_008643_100 Hb_003057_110--Hb_008643_100 Hb_004724_060 Hb_004724_060 Hb_003057_110--Hb_004724_060 Hb_001507_020 Hb_001507_020 Hb_003057_110--Hb_001507_020 Hb_001680_010 Hb_001680_010 Hb_003057_110--Hb_001680_010 Hb_000577_010 Hb_000577_010 Hb_003057_110--Hb_000577_010 Hb_000028_280 Hb_000028_280 Hb_004143_130--Hb_000028_280 Hb_002942_100 Hb_002942_100 Hb_004143_130--Hb_002942_100 Hb_003253_040 Hb_003253_040 Hb_004143_130--Hb_003253_040 Hb_010174_110 Hb_010174_110 Hb_004143_130--Hb_010174_110 Hb_002740_110 Hb_002740_110 Hb_004143_130--Hb_002740_110 Hb_004032_380 Hb_004032_380 Hb_004143_130--Hb_004032_380 Hb_013405_030 Hb_013405_030 Hb_000574_390--Hb_013405_030 Hb_015198_020 Hb_015198_020 Hb_000574_390--Hb_015198_020 Hb_000631_080 Hb_000631_080 Hb_000574_390--Hb_000631_080 Hb_086639_040 Hb_086639_040 Hb_000574_390--Hb_086639_040 Hb_011242_040 Hb_011242_040 Hb_000574_390--Hb_011242_040 Hb_000707_050 Hb_000707_050 Hb_000574_390--Hb_000707_050 Hb_007441_200 Hb_007441_200 Hb_003106_060--Hb_007441_200 Hb_003226_180 Hb_003226_180 Hb_003106_060--Hb_003226_180 Hb_003106_060--Hb_000227_120 Hb_003464_060 Hb_003464_060 Hb_003106_060--Hb_003464_060 Hb_000329_470 Hb_000329_470 Hb_003106_060--Hb_000329_470 Hb_002016_110 Hb_002016_110 Hb_006915_050--Hb_002016_110 Hb_008695_210 Hb_008695_210 Hb_006915_050--Hb_008695_210 Hb_000754_040 Hb_000754_040 Hb_006915_050--Hb_000754_040 Hb_000111_360 Hb_000111_360 Hb_006915_050--Hb_000111_360 Hb_000907_080 Hb_000907_080 Hb_006915_050--Hb_000907_080 Hb_189003_080 Hb_189003_080 Hb_006915_050--Hb_189003_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
28.5863 25.1349 9.7557 13.1508 26.719 35.8786
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
35.6932 21.4008 44.7806 21.1791 29.65

CAGE analysis