Hb_004724_060

Information

Type -
Description -
Location Contig4724: 49860-60206
Sequence    

Annotation

kegg
ID rcu:RCOM_1280790
description hypothetical protein
nr
ID XP_012079780.1
description PREDICTED: uncharacterized protein LOC105640155 isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID B9SCS6
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1280790 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44320: 50604-60107 , PASA_asmbl_44321: 49843-52664 , PASA_asmbl_44322: 49876-50591
cDNA
(Sanger)
(ID:Location)		 009_K11.ab1: 49843-52657

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004724_060 0.0 - - PREDICTED: uncharacterized protein LOC105640155 isoform X1 [Jatropha curcas]
2 Hb_001797_050 0.0552708658 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 3-like isoform X1 [Jatropha curcas]
3 Hb_000577_010 0.057368782 - - hypothetical protein JCGZ_23887 [Jatropha curcas]
4 Hb_007163_090 0.0672174504 - - PREDICTED: protein spt2-like [Jatropha curcas]
5 Hb_000820_170 0.0672186856 - - PREDICTED: THO complex subunit 4A [Jatropha curcas]
6 Hb_008500_010 0.0672789596 - - PREDICTED: pentatricopeptide repeat-containing protein At2g17210 [Jatropha curcas]
7 Hb_123352_020 0.0677941091 - - PREDICTED: pentatricopeptide repeat-containing protein At5g65560 [Jatropha curcas]
8 Hb_009411_010 0.0702320093 - - PREDICTED: uncharacterized protein LOC105645272 [Jatropha curcas]
9 Hb_004684_010 0.0703284616 - - PREDICTED: triacylglycerol lipase SDP1 [Jatropha curcas]
10 Hb_000487_290 0.0706647405 - - ribonucleic acid binding protein S1, putative [Ricinus communis]
11 Hb_001226_030 0.0731792813 transcription factor TF Family: Alfin-like PREDICTED: PHD finger protein ALFIN-LIKE 4 [Jatropha curcas]
12 Hb_005731_030 0.0732793364 - - PREDICTED: UPF0400 protein C337.03 [Jatropha curcas]
13 Hb_000101_240 0.073736716 desease resistance Gene Name: NB-ARC putative disease resistance gene NBS-LRR family protein [Populus trichocarpa]
14 Hb_005188_050 0.0744701086 - - PREDICTED: DNA-directed RNA polymerase 2B, chloroplastic/mitochondrial isoform X1 [Jatropha curcas]
15 Hb_003938_080 0.0753048124 - - PREDICTED: uncharacterized protein LOC105644554 [Jatropha curcas]
16 Hb_002311_040 0.0753477495 - - hypothetical protein JCGZ_18966 [Jatropha curcas]
17 Hb_000827_070 0.0755483192 desease resistance Gene Name: NB-ARC PREDICTED: protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1-like [Jatropha curcas]
18 Hb_001680_010 0.0763536332 - - Serine/threonine protein kinase SAPK3 [Medicago truncatula]
19 Hb_007757_110 0.0768234669 - - PREDICTED: E3 ubiquitin-protein ligase UPL5 [Jatropha curcas]
20 Hb_000072_220 0.076958859 - - PREDICTED: pentatricopeptide repeat-containing protein At3g02490, mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_004724_060 Hb_004724_060 Hb_001797_050 Hb_001797_050 Hb_004724_060--Hb_001797_050 Hb_000577_010 Hb_000577_010 Hb_004724_060--Hb_000577_010 Hb_007163_090 Hb_007163_090 Hb_004724_060--Hb_007163_090 Hb_000820_170 Hb_000820_170 Hb_004724_060--Hb_000820_170 Hb_008500_010 Hb_008500_010 Hb_004724_060--Hb_008500_010 Hb_123352_020 Hb_123352_020 Hb_004724_060--Hb_123352_020 Hb_000207_390 Hb_000207_390 Hb_001797_050--Hb_000207_390 Hb_001797_050--Hb_007163_090 Hb_009411_010 Hb_009411_010 Hb_001797_050--Hb_009411_010 Hb_004204_080 Hb_004204_080 Hb_001797_050--Hb_004204_080 Hb_000803_190 Hb_000803_190 Hb_001797_050--Hb_000803_190 Hb_000577_010--Hb_007163_090 Hb_001663_030 Hb_001663_030 Hb_000577_010--Hb_001663_030 Hb_003464_060 Hb_003464_060 Hb_000577_010--Hb_003464_060 Hb_001226_030 Hb_001226_030 Hb_000577_010--Hb_001226_030 Hb_000577_010--Hb_001797_050 Hb_007163_090--Hb_001226_030 Hb_001301_200 Hb_001301_200 Hb_007163_090--Hb_001301_200 Hb_007163_090--Hb_000207_390 Hb_007163_090--Hb_123352_020 Hb_006252_040 Hb_006252_040 Hb_000820_170--Hb_006252_040 Hb_003428_070 Hb_003428_070 Hb_000820_170--Hb_003428_070 Hb_016898_010 Hb_016898_010 Hb_000820_170--Hb_016898_010 Hb_005731_030 Hb_005731_030 Hb_000820_170--Hb_005731_030 Hb_000101_240 Hb_000101_240 Hb_000820_170--Hb_000101_240 Hb_000820_170--Hb_123352_020 Hb_006316_040 Hb_006316_040 Hb_008500_010--Hb_006316_040 Hb_001584_150 Hb_001584_150 Hb_008500_010--Hb_001584_150 Hb_012656_030 Hb_012656_030 Hb_008500_010--Hb_012656_030 Hb_015807_070 Hb_015807_070 Hb_008500_010--Hb_015807_070 Hb_002311_040 Hb_002311_040 Hb_008500_010--Hb_002311_040 Hb_001143_160 Hb_001143_160 Hb_123352_020--Hb_001143_160 Hb_000487_290 Hb_000487_290 Hb_123352_020--Hb_000487_290 Hb_000225_040 Hb_000225_040 Hb_123352_020--Hb_000225_040 Hb_123352_020--Hb_005731_030 Hb_000457_260 Hb_000457_260 Hb_123352_020--Hb_000457_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
26.7191 24.1656 11.4244 9.50314 27.2458 38.3923
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
22.4011 17.4827 29.7827 19.0145 17.2789

CAGE analysis