Hb_001663_030

Information

Type -
Description -
Location Contig1663: 24777-28533
Sequence    

Annotation

kegg
ID cit:102618476
description peroxisomal membrane protein 13-like
nr
ID XP_012084252.1
description PREDICTED: peroxisomal membrane protein 13 [Jatropha curcas]
swissprot
ID Q9SRR0
description Peroxisomal membrane protein 13 OS=Arabidopsis thaliana GN=PEX13 PE=1 SV=1
trembl
ID A0A067L9Q2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15046 PE=4 SV=1
Gene Ontology
ID GO:0005622
description peroxisomal membrane protein 13

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15350: 24822-29040
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001663_030 0.0 - - PREDICTED: peroxisomal membrane protein 13 [Jatropha curcas]
2 Hb_000577_010 0.0691174834 - - hypothetical protein JCGZ_23887 [Jatropha curcas]
3 Hb_003994_240 0.0700966857 - - Mediator subunit 8 isoform 3 [Theobroma cacao]
4 Hb_007163_090 0.0725348747 - - PREDICTED: protein spt2-like [Jatropha curcas]
5 Hb_000802_080 0.0747893921 - - PREDICTED: F-box protein At5g46170-like [Jatropha curcas]
6 Hb_001789_090 0.0764027079 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105648450 [Jatropha curcas]
7 Hb_000260_220 0.0776571519 - - PREDICTED: RING finger and transmembrane domain-containing protein 2 isoform X1 [Jatropha curcas]
8 Hb_002030_030 0.0787536922 - - PREDICTED: GLABRA2 expression modulator [Jatropha curcas]
9 Hb_004837_040 0.0819386776 - - PREDICTED: nucleolar GTP-binding protein 1-like [Prunus mume]
10 Hb_001936_020 0.0822693031 - - PREDICTED: phosphatidylinositol 3-kinase, root isoform isoform X1 [Jatropha curcas]
11 Hb_000062_240 0.0827285662 - - PREDICTED: signal recognition particle subunit SRP72 [Jatropha curcas]
12 Hb_004934_090 0.0838665318 - - hypothetical protein JCGZ_08073 [Jatropha curcas]
13 Hb_000429_120 0.0848475835 - - PREDICTED: DNA-directed RNA polymerase I subunit rpa1 [Jatropha curcas]
14 Hb_001301_200 0.0848751857 desease resistance Gene Name: NB-ARC Disease resistance protein RPS2, putative [Ricinus communis]
15 Hb_000318_510 0.0852590964 - - PREDICTED: pentatricopeptide repeat-containing protein At2g15980 [Jatropha curcas]
16 Hb_003728_030 0.0854706322 - - o-sialoglycoprotein endopeptidase, putative [Ricinus communis]
17 Hb_008085_010 0.0857220686 - - PREDICTED: pentatricopeptide repeat-containing protein At4g26680, mitochondrial [Jatropha curcas]
18 Hb_002054_040 0.0857413941 - - PREDICTED: putative clathrin assembly protein At5g35200 [Jatropha curcas]
19 Hb_004204_020 0.0857963656 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105640780 [Jatropha curcas]
20 Hb_000803_190 0.0864381505 - - PREDICTED: THUMP domain-containing protein 1 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001663_030 Hb_001663_030 Hb_000577_010 Hb_000577_010 Hb_001663_030--Hb_000577_010 Hb_003994_240 Hb_003994_240 Hb_001663_030--Hb_003994_240 Hb_007163_090 Hb_007163_090 Hb_001663_030--Hb_007163_090 Hb_000802_080 Hb_000802_080 Hb_001663_030--Hb_000802_080 Hb_001789_090 Hb_001789_090 Hb_001663_030--Hb_001789_090 Hb_000260_220 Hb_000260_220 Hb_001663_030--Hb_000260_220 Hb_000577_010--Hb_007163_090 Hb_004724_060 Hb_004724_060 Hb_000577_010--Hb_004724_060 Hb_003464_060 Hb_003464_060 Hb_000577_010--Hb_003464_060 Hb_001226_030 Hb_001226_030 Hb_000577_010--Hb_001226_030 Hb_001797_050 Hb_001797_050 Hb_000577_010--Hb_001797_050 Hb_001936_020 Hb_001936_020 Hb_003994_240--Hb_001936_020 Hb_004934_090 Hb_004934_090 Hb_003994_240--Hb_004934_090 Hb_003728_030 Hb_003728_030 Hb_003994_240--Hb_003728_030 Hb_004108_140 Hb_004108_140 Hb_003994_240--Hb_004108_140 Hb_002030_030 Hb_002030_030 Hb_003994_240--Hb_002030_030 Hb_007163_090--Hb_001226_030 Hb_001301_200 Hb_001301_200 Hb_007163_090--Hb_001301_200 Hb_000207_390 Hb_000207_390 Hb_007163_090--Hb_000207_390 Hb_123352_020 Hb_123352_020 Hb_007163_090--Hb_123352_020 Hb_007163_090--Hb_001797_050 Hb_000802_080--Hb_001789_090 Hb_002811_360 Hb_002811_360 Hb_000802_080--Hb_002811_360 Hb_001366_190 Hb_001366_190 Hb_000802_080--Hb_001366_190 Hb_000802_080--Hb_001301_200 Hb_023344_030 Hb_023344_030 Hb_000802_080--Hb_023344_030 Hb_000062_240 Hb_000062_240 Hb_001789_090--Hb_000062_240 Hb_015306_020 Hb_015306_020 Hb_001789_090--Hb_015306_020 Hb_000291_110 Hb_000291_110 Hb_001789_090--Hb_000291_110 Hb_001789_090--Hb_002811_360 Hb_000406_220 Hb_000406_220 Hb_001789_090--Hb_000406_220 Hb_000031_220 Hb_000031_220 Hb_000260_220--Hb_000031_220 Hb_010931_120 Hb_010931_120 Hb_000260_220--Hb_010931_120 Hb_002054_040 Hb_002054_040 Hb_000260_220--Hb_002054_040 Hb_002374_050 Hb_002374_050 Hb_000260_220--Hb_002374_050 Hb_016657_010 Hb_016657_010 Hb_000260_220--Hb_016657_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
224.556 171.749 38.1199 94.7467 188.291 318.498
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
227.314 142.564 208.042 163.075 93.0511

CAGE analysis