Hb_000291_110

Information

Type -
Description -
Location Contig291: 96090-98576
Sequence    

Annotation

kegg
ID rcu:RCOM_1033150
description eukaryotic translation initiation factor, putative
nr
ID AHA83527.1
description eukaryotic translation initiation factor [Hevea brasiliensis]
swissprot
ID Q9S825
description Probable eukaryotic translation initiation factor 5-2 OS=Arabidopsis thaliana GN=At1g77840 PE=2 SV=1
trembl
ID W5RRP1
description Eukaryotic translation initiation factor OS=Hevea brasiliensis PE=2 SV=1
Gene Ontology
ID GO:0003743
description eukaryotic translation initiation factor 5-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30503: 96634-98856 , PASA_asmbl_30504: 95714-98960 , PASA_asmbl_30505: 95882-96314
cDNA
(Sanger)
(ID:Location)		 001_J19.ab1: 95714-97637 , 002_I19.ab1: 95714-97612

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000291_110 0.0 - - eukaryotic translation initiation factor [Hevea brasiliensis]
2 Hb_000062_240 0.0629769063 - - PREDICTED: signal recognition particle subunit SRP72 [Jatropha curcas]
3 Hb_001789_090 0.0634817563 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105648450 [Jatropha curcas]
4 Hb_181235_010 0.0719336551 transcription factor TF Family: NAC PREDICTED: uncharacterized protein LOC105645554 isoform X2 [Jatropha curcas]
5 Hb_004837_040 0.0755272169 - - PREDICTED: nucleolar GTP-binding protein 1-like [Prunus mume]
6 Hb_003750_080 0.0770734874 - - PREDICTED: DNA repair protein complementing XP-C cells homolog [Jatropha curcas]
7 Hb_000061_420 0.0794782474 - - PREDICTED: uncharacterized protein LOC105640585 [Jatropha curcas]
8 Hb_000061_460 0.081132071 transcription factor TF Family: SNF2 ATP binding protein, putative [Ricinus communis]
9 Hb_000805_020 0.0821029541 - - pumilio/Puf RNA-binding domain-containing family protein [Populus trichocarpa]
10 Hb_002016_110 0.082485456 - - transducin family protein [Populus trichocarpa]
11 Hb_000152_820 0.0857025651 - - PREDICTED: pentatricopeptide repeat-containing protein At5g64320, mitochondrial [Jatropha curcas]
12 Hb_001269_550 0.086026462 - - hypothetical protein POPTR_0001s03510g [Populus trichocarpa]
13 Hb_002154_030 0.0866818075 - - RNA binding protein, putative [Ricinus communis]
14 Hb_004907_110 0.0873705159 - - PREDICTED: BTB/POZ and MATH domain-containing protein 3 isoform X1 [Jatropha curcas]
15 Hb_089032_040 0.0875768991 - - PREDICTED: pentatricopeptide repeat-containing protein At1g80550, mitochondrial [Jatropha curcas]
16 Hb_000406_220 0.0879603745 - - hypothetical protein POPTR_0005s04700g [Populus trichocarpa]
17 Hb_010175_020 0.0884299491 - - PREDICTED: cysteine desulfurase, mitochondrial isoform X1 [Jatropha curcas]
18 Hb_002137_020 0.0891155264 - - ubiquitin-protein ligase, putative [Ricinus communis]
19 Hb_000676_110 0.0895280212 - - glycosyl transferase family 1 family protein [Populus trichocarpa]
20 Hb_000802_080 0.0897645206 - - PREDICTED: F-box protein At5g46170-like [Jatropha curcas]

Gene co-expression network

sample Hb_000291_110 Hb_000291_110 Hb_000062_240 Hb_000062_240 Hb_000291_110--Hb_000062_240 Hb_001789_090 Hb_001789_090 Hb_000291_110--Hb_001789_090 Hb_181235_010 Hb_181235_010 Hb_000291_110--Hb_181235_010 Hb_004837_040 Hb_004837_040 Hb_000291_110--Hb_004837_040 Hb_003750_080 Hb_003750_080 Hb_000291_110--Hb_003750_080 Hb_000061_420 Hb_000061_420 Hb_000291_110--Hb_000061_420 Hb_000062_240--Hb_004837_040 Hb_000062_240--Hb_001789_090 Hb_002811_360 Hb_002811_360 Hb_000062_240--Hb_002811_360 Hb_000418_100 Hb_000418_100 Hb_000062_240--Hb_000418_100 Hb_015306_020 Hb_015306_020 Hb_000062_240--Hb_015306_020 Hb_000802_080 Hb_000802_080 Hb_001789_090--Hb_000802_080 Hb_001789_090--Hb_015306_020 Hb_001789_090--Hb_002811_360 Hb_000406_220 Hb_000406_220 Hb_001789_090--Hb_000406_220 Hb_002154_030 Hb_002154_030 Hb_181235_010--Hb_002154_030 Hb_002477_030 Hb_002477_030 Hb_181235_010--Hb_002477_030 Hb_003777_330 Hb_003777_330 Hb_181235_010--Hb_003777_330 Hb_181235_010--Hb_000062_240 Hb_000032_290 Hb_000032_290 Hb_181235_010--Hb_000032_290 Hb_181235_010--Hb_000406_220 Hb_000000_370 Hb_000000_370 Hb_004837_040--Hb_000000_370 Hb_002496_030 Hb_002496_030 Hb_004837_040--Hb_002496_030 Hb_000203_160 Hb_000203_160 Hb_004837_040--Hb_000203_160 Hb_000629_010 Hb_000629_010 Hb_004837_040--Hb_000629_010 Hb_175338_030 Hb_175338_030 Hb_004837_040--Hb_175338_030 Hb_010710_010 Hb_010710_010 Hb_003750_080--Hb_010710_010 Hb_000413_180 Hb_000413_180 Hb_003750_080--Hb_000413_180 Hb_000230_080 Hb_000230_080 Hb_003750_080--Hb_000230_080 Hb_001584_160 Hb_001584_160 Hb_003750_080--Hb_001584_160 Hb_003750_080--Hb_000062_240 Hb_003680_200 Hb_003680_200 Hb_000061_420--Hb_003680_200 Hb_018790_060 Hb_018790_060 Hb_000061_420--Hb_018790_060 Hb_000224_170 Hb_000224_170 Hb_000061_420--Hb_000224_170 Hb_000926_330 Hb_000926_330 Hb_000061_420--Hb_000926_330 Hb_000061_420--Hb_181235_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
104.685 88.9844 32.1277 57.3739 133.395 143.288
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
118.118 116.133 181.503 111.327 32.7313

CAGE analysis