Hb_003680_200

Information

Type -
Description -
Location Contig3680: 208277-215378
Sequence    

Annotation

kegg
ID mdm:103427554
description F-box protein PP2-A15-like
nr
ID XP_012082540.1
description PREDICTED: F-box protein PP2-A15 [Jatropha curcas]
swissprot
ID Q9LF92
description F-box protein PP2-A15 OS=Arabidopsis thaliana GN=PP2A15 PE=2 SV=1
trembl
ID A0A067JZG0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16626 PE=4 SV=1
Gene Ontology
ID GO:0005634
description f-box protein pp2-a15

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37846: 200271-215578
cDNA
(Sanger)
(ID:Location)		 005_C20.ab1: 200833-215578 , 048_P16.ab1: 200919-215578

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003680_200 0.0 - - PREDICTED: F-box protein PP2-A15 [Jatropha curcas]
2 Hb_000061_420 0.05369894 - - PREDICTED: uncharacterized protein LOC105640585 [Jatropha curcas]
3 Hb_018790_060 0.0996276438 - - hypothetical protein JCGZ_21628 [Jatropha curcas]
4 Hb_000224_170 0.0997588304 - - hypothetical protein JCGZ_13777 [Jatropha curcas]
5 Hb_000510_320 0.1012466686 - - PREDICTED: uncharacterized protein LOC105649907 [Jatropha curcas]
6 Hb_000696_040 0.1034647632 - - protein phosphatase 2c, putative [Ricinus communis]
7 Hb_004976_030 0.1035429603 - - hypothetical protein POPTR_0005s04700g [Populus trichocarpa]
8 Hb_008695_180 0.1078874825 - - eukaryotic translation initiation factor [Hevea brasiliensis]
9 Hb_001123_230 0.1086992046 - - PREDICTED: uncharacterized protein LOC105647321 [Jatropha curcas]
10 Hb_000291_110 0.1108871117 - - eukaryotic translation initiation factor [Hevea brasiliensis]
11 Hb_001863_390 0.1113654408 - - PREDICTED: monoacylglycerol lipase ABHD6 [Jatropha curcas]
12 Hb_000926_330 0.1130896357 transcription factor TF Family: ERF ethylene-responsive transcription factor 3-like [Jatropha curcas]
13 Hb_046198_010 0.1135765562 - - PREDICTED: NADPH-dependent pterin aldehyde reductase [Jatropha curcas]
14 Hb_000200_050 0.1149332395 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
15 Hb_000086_400 0.115318137 - - calmodulin binding protein, putative [Ricinus communis]
16 Hb_000676_110 0.115755719 - - glycosyl transferase family 1 family protein [Populus trichocarpa]
17 Hb_000207_250 0.1159042109 - - Non-imprinted in Prader-Willi/Angelman syndrome region protein, putative [Ricinus communis]
18 Hb_000062_220 0.1164104131 - - BnaC02g35870D [Brassica napus]
19 Hb_006816_140 0.1168036941 - - PREDICTED: pentatricopeptide repeat-containing protein At1g09820 [Jatropha curcas]
20 Hb_002154_030 0.117351503 - - RNA binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_003680_200 Hb_003680_200 Hb_000061_420 Hb_000061_420 Hb_003680_200--Hb_000061_420 Hb_018790_060 Hb_018790_060 Hb_003680_200--Hb_018790_060 Hb_000224_170 Hb_000224_170 Hb_003680_200--Hb_000224_170 Hb_000510_320 Hb_000510_320 Hb_003680_200--Hb_000510_320 Hb_000696_040 Hb_000696_040 Hb_003680_200--Hb_000696_040 Hb_004976_030 Hb_004976_030 Hb_003680_200--Hb_004976_030 Hb_000061_420--Hb_018790_060 Hb_000061_420--Hb_000224_170 Hb_000291_110 Hb_000291_110 Hb_000061_420--Hb_000291_110 Hb_000926_330 Hb_000926_330 Hb_000061_420--Hb_000926_330 Hb_181235_010 Hb_181235_010 Hb_000061_420--Hb_181235_010 Hb_022216_020 Hb_022216_020 Hb_018790_060--Hb_022216_020 Hb_000009_160 Hb_000009_160 Hb_018790_060--Hb_000009_160 Hb_001123_230 Hb_001123_230 Hb_018790_060--Hb_001123_230 Hb_018790_060--Hb_000224_170 Hb_005147_090 Hb_005147_090 Hb_018790_060--Hb_005147_090 Hb_001623_420 Hb_001623_420 Hb_000224_170--Hb_001623_420 Hb_031527_040 Hb_031527_040 Hb_000224_170--Hb_031527_040 Hb_000224_170--Hb_000926_330 Hb_000224_170--Hb_181235_010 Hb_003777_330 Hb_003777_330 Hb_000224_170--Hb_003777_330 Hb_002105_040 Hb_002105_040 Hb_000510_320--Hb_002105_040 Hb_000175_460 Hb_000175_460 Hb_000510_320--Hb_000175_460 Hb_000086_400 Hb_000086_400 Hb_000510_320--Hb_000086_400 Hb_004738_040 Hb_004738_040 Hb_000510_320--Hb_004738_040 Hb_000876_070 Hb_000876_070 Hb_000510_320--Hb_000876_070 Hb_181288_020 Hb_181288_020 Hb_000510_320--Hb_181288_020 Hb_001699_130 Hb_001699_130 Hb_000696_040--Hb_001699_130 Hb_004607_030 Hb_004607_030 Hb_000696_040--Hb_004607_030 Hb_016901_010 Hb_016901_010 Hb_000696_040--Hb_016901_010 Hb_000617_150 Hb_000617_150 Hb_000696_040--Hb_000617_150 Hb_000062_220 Hb_000062_220 Hb_000696_040--Hb_000062_220 Hb_002631_060 Hb_002631_060 Hb_000696_040--Hb_002631_060 Hb_000207_250 Hb_000207_250 Hb_004976_030--Hb_000207_250 Hb_000200_050 Hb_000200_050 Hb_004976_030--Hb_000200_050 Hb_154648_010 Hb_154648_010 Hb_004976_030--Hb_154648_010 Hb_000000_250 Hb_000000_250 Hb_004976_030--Hb_000000_250 Hb_003996_020 Hb_003996_020 Hb_004976_030--Hb_003996_020 Hb_004109_190 Hb_004109_190 Hb_004976_030--Hb_004109_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.27 9.06565 4.05696 7.56856 20.1148 13.037
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.0922 17.8024 24.3427 7.56214 4.21651

CAGE analysis