Hb_016901_010

Information

Type -
Description -
Location Contig16901: 7992-19195
Sequence    

Annotation

kegg
ID rcu:RCOM_0301990
description hypothetical protein
nr
ID XP_012074141.1
description PREDICTED: WPP domain-interacting protein 1-like [Jatropha curcas]
swissprot
ID Q8GXA4
description WPP domain-interacting protein 1 OS=Arabidopsis thaliana GN=WIP1 PE=1 SV=1
trembl
ID A0A067KJN0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09527 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15717: 8132-18982
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_016901_010 0.0 - - PREDICTED: WPP domain-interacting protein 1-like [Jatropha curcas]
2 Hb_001454_190 0.0681621305 - - PREDICTED: pentatricopeptide repeat-containing protein At3g06920 [Jatropha curcas]
3 Hb_000696_040 0.0757184799 - - protein phosphatase 2c, putative [Ricinus communis]
4 Hb_010172_050 0.0764308193 - - PREDICTED: pentatricopeptide repeat-containing protein At4g21065 [Jatropha curcas]
5 Hb_085863_030 0.0774003462 - - PREDICTED: pentatricopeptide repeat-containing protein At1g31430 [Jatropha curcas]
6 Hb_000723_080 0.0780902683 - - PREDICTED: transcription initiation factor TFIID subunit 8 [Jatropha curcas]
7 Hb_000343_130 0.0786324426 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor ASIL1-like [Jatropha curcas]
8 Hb_006816_140 0.0791571428 - - PREDICTED: pentatricopeptide repeat-containing protein At1g09820 [Jatropha curcas]
9 Hb_004993_050 0.0791731502 - - -
10 Hb_000258_270 0.080056698 - - PREDICTED: cullin-3A [Jatropha curcas]
11 Hb_000805_020 0.0832231114 - - pumilio/Puf RNA-binding domain-containing family protein [Populus trichocarpa]
12 Hb_007747_200 0.0832775048 - - PREDICTED: putative pentatricopeptide repeat-containing protein At5g37570 [Jatropha curcas]
13 Hb_008695_100 0.0833228368 - - PREDICTED: mediator of RNA polymerase II transcription subunit 1 isoform X2 [Jatropha curcas]
14 Hb_001699_130 0.0833311191 transcription factor TF Family: CSD PREDICTED: cold shock domain-containing protein 3 [Jatropha curcas]
15 Hb_000002_050 0.0836840334 - - PREDICTED: pentatricopeptide repeat-containing protein At4g33990 [Jatropha curcas]
16 Hb_000086_400 0.0844062202 - - calmodulin binding protein, putative [Ricinus communis]
17 Hb_000000_250 0.0849890535 - - PREDICTED: putative pentatricopeptide repeat-containing protein At1g19290 [Jatropha curcas]
18 Hb_008695_210 0.0853145786 - - PREDICTED: serine hydroxymethyltransferase 7 [Jatropha curcas]
19 Hb_012325_020 0.085750417 - - PREDICTED: ATPase family AAA domain-containing protein At1g05910 isoform X1 [Jatropha curcas]
20 Hb_000307_030 0.0858190689 - - PREDICTED: pentatricopeptide repeat-containing protein At5g40410, mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_016901_010 Hb_016901_010 Hb_001454_190 Hb_001454_190 Hb_016901_010--Hb_001454_190 Hb_000696_040 Hb_000696_040 Hb_016901_010--Hb_000696_040 Hb_010172_050 Hb_010172_050 Hb_016901_010--Hb_010172_050 Hb_085863_030 Hb_085863_030 Hb_016901_010--Hb_085863_030 Hb_000723_080 Hb_000723_080 Hb_016901_010--Hb_000723_080 Hb_000343_130 Hb_000343_130 Hb_016901_010--Hb_000343_130 Hb_172932_010 Hb_172932_010 Hb_001454_190--Hb_172932_010 Hb_012325_020 Hb_012325_020 Hb_001454_190--Hb_012325_020 Hb_000617_150 Hb_000617_150 Hb_001454_190--Hb_000617_150 Hb_000002_050 Hb_000002_050 Hb_001454_190--Hb_000002_050 Hb_011534_030 Hb_011534_030 Hb_001454_190--Hb_011534_030 Hb_001699_130 Hb_001699_130 Hb_000696_040--Hb_001699_130 Hb_004607_030 Hb_004607_030 Hb_000696_040--Hb_004607_030 Hb_000696_040--Hb_000617_150 Hb_000062_220 Hb_000062_220 Hb_000696_040--Hb_000062_220 Hb_002631_060 Hb_002631_060 Hb_000696_040--Hb_002631_060 Hb_000022_250 Hb_000022_250 Hb_010172_050--Hb_000022_250 Hb_002518_140 Hb_002518_140 Hb_010172_050--Hb_002518_140 Hb_003266_130 Hb_003266_130 Hb_010172_050--Hb_003266_130 Hb_178968_110 Hb_178968_110 Hb_010172_050--Hb_178968_110 Hb_000063_140 Hb_000063_140 Hb_010172_050--Hb_000063_140 Hb_000086_400 Hb_000086_400 Hb_085863_030--Hb_000086_400 Hb_009178_030 Hb_009178_030 Hb_085863_030--Hb_009178_030 Hb_000056_240 Hb_000056_240 Hb_085863_030--Hb_000056_240 Hb_008725_260 Hb_008725_260 Hb_085863_030--Hb_008725_260 Hb_000866_220 Hb_000866_220 Hb_085863_030--Hb_000866_220 Hb_008695_100 Hb_008695_100 Hb_000723_080--Hb_008695_100 Hb_000567_120 Hb_000567_120 Hb_000723_080--Hb_000567_120 Hb_002256_020 Hb_002256_020 Hb_000723_080--Hb_002256_020 Hb_001140_220 Hb_001140_220 Hb_000723_080--Hb_001140_220 Hb_005289_030 Hb_005289_030 Hb_000723_080--Hb_005289_030 Hb_000635_220 Hb_000635_220 Hb_000343_130--Hb_000635_220 Hb_007747_200 Hb_007747_200 Hb_000343_130--Hb_007747_200 Hb_000317_280 Hb_000317_280 Hb_000343_130--Hb_000317_280 Hb_002006_090 Hb_002006_090 Hb_000343_130--Hb_002006_090 Hb_000111_360 Hb_000111_360 Hb_000343_130--Hb_000111_360
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
33.7121 23.7593 9.27867 16.6272 26.8851 32.1352
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
30.3095 47.9676 66.3178 25.6072 20.1843

CAGE analysis